SMTL ID : 5o6a.3 (3 other biounits)

The cryo-EM structure of Tick-borne encephalitis virus mature particle

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY 3.90 Å

Oligo State

hetero-18-18-mer

Ligands

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.154 Chain B: H.104 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: H.104 Chain B: N.154, E.155 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain C: N.154, E.155 Chain O: H.104 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain G: N.154 Chain H: H.104 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain G: H.104 Chain H: N.154, E.155 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain 0: H.104 Chain I: N.154, E.155 Ligand excluded by PLIP NAG.7: 2 residues within 4Å: Chain M: N.154 Chain N: H.104 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain M: H.104 Chain N: N.154, E.155 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain C: H.104 Chain O: N.154, E.155 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain S: N.154 Chain T: H.104 Ligand excluded by PLIP NAG.11: 3 residues within 4Å: Chain S: H.104 Chain T: N.154, E.155 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain 6: H.104 Chain U: N.154, E.155 Ligand excluded by PLIP NAG.13: 2 residues within 4Å: Chain Y: N.154 Chain Z: H.104 Ligand excluded by PLIP NAG.14: 3 residues within 4Å: Chain Y: H.104 Chain Z: N.154, E.155 Ligand excluded by PLIP NAG.15: 3 residues within 4Å: Chain 0: N.154, E.155 Chain I: H.104 Ligand excluded by PLIP NAG.16: 2 residues within 4Å: Chain 4: N.154 Chain 5: H.104 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain 4: H.104 Chain 5: N.154, E.155 Ligand excluded by PLIP NAG.18: 3 residues within 4Å: Chain 6: N.154, E.155 Chain U: H.104 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fuzik, T. et al., Structure of tick-borne encephalitis virus and its neutralization by a monoclonal antibody. Nat Commun (2018)

Release Date

2018-02-07

Peptides

Envelope protein: ABCGHIMNOSTUYZ0456
Small envelope protein M: DEFJKLPQRVWX123789

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

G
A

H
B

I
C

M
A

N
B

O
C

S
A

T
B

U
C

Y
A

Z
B

0
C

4
A

5
B

6
C

D
D

E
E

F
F

J
D

K
E

L
F

P
D

Q
E

R
F

V
D

W
E

X
F

1
D

2
E

3
F

7
D

8
E

9
F

Envelope protein

Small envelope protein M

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