SMTL ID : 5oc5.1

Crystal structure of human tRNA-dihydrouridine(20) synthase dsRBD K419A-K420A mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: T.54, V.55, Q.56, F.63, A.83 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.56 GOL.2: 5 residues within 4Å: Chain A: Q.56, D.60, R.61, L.62, K.81 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.61 Water bridges: A:Q.56 GOL.3: 3 residues within 4Å: Chain A: Q.56, F.63 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.56 Water bridges: A:Q.56, A:Q.56

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 4 residues within 4Å: Chain A: R.25, S.82, A.84, L.85 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: K.35, L.39, Y.52 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bou-Nader, C. et al., Molecular basis for transfer RNA recognition by the double-stranded RNA-binding domain of human dihydrouridine synthase 2. Nucleic Acids Res. (2019)

Release Date

2018-12-26

Peptides

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

tRNA-dihydrouridine(20) synthase [NAD(P)+]-like