SMTL ID : 5ofw.1

Crystal structure of human 3-phosphoglycerate dehydrogenase in complex with 3-Chloro-4-fluorobenzamide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x 9TW: 3-chloranyl-4-fluoranyl-benzamide(Non-covalent)

9TW.1: 10 residues within 4Å: Chain A: L.59, G.60, Y.82, P.84, L.101, T.115, L.118, S.120, T.121, L.124 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.82, A:P.84, A:T.115, A:T.121, A:L.124 Hydrogen bonds: A:S.120 Halogen bonds: A:Y.82 9TW.2: 10 residues within 4Å: Chain B: L.59, G.60, Y.82, P.84, L.101, T.115, L.118, S.120, T.121, L.124 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:P.84, B:T.115, B:T.121, B:L.124 Hydrogen bonds: B:S.120, B:S.120 Halogen bonds: B:Y.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unterlass, J.E. et al., Validating and enabling phosphoglycerate dehydrogenase (PHGDH) as a target for fragment-based drug discovery in PHGDH-amplified breast cancer. Oncotarget (2018)

Release Date

2017-08-16

Peptides

D-3-phosphoglycerate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

D-3-phosphoglycerate dehydrogenase

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