- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.29 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x FE: FE (III) ION(Non-covalent)
- 6 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
FEG.4: 22 residues within 4Å:- Chain A: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Chain C: D.189
- Ligands: FE.1
16 PLIP interactions:16 interactions with chain A- Hydrophobic interactions: A:W.144, A:A.171
- Hydrogen bonds: A:A.8, A:G.9, A:G.9, A:C.10, A:C.10, A:A.62, A:C.172
- Water bridges: A:T.13, A:H.14, A:T.129
- Salt bridges: A:D.63, A:D.131, A:H.203
- pi-Stacking: A:F.145
FEG.9: 22 residues within 4Å:- Chain A: D.189
- Chain B: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Ligands: FE.6
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:W.144, B:A.171
- Hydrogen bonds: B:A.8, B:G.9, B:G.9, B:C.10, B:C.10, B:A.62, B:C.172
- Water bridges: B:T.13, B:H.14, B:T.129
- Salt bridges: B:D.63, B:D.131, B:H.203
- pi-Stacking: B:F.145
FEG.14: 22 residues within 4Å:- Chain B: D.189
- Chain C: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Ligands: FE.11
16 PLIP interactions:16 interactions with chain C- Hydrophobic interactions: C:W.144, C:A.171
- Hydrogen bonds: C:A.8, C:G.9, C:G.9, C:C.10, C:C.10, C:A.62, C:C.172
- Water bridges: C:T.13, C:H.14, C:T.129
- Salt bridges: C:D.63, C:D.131, C:H.203
- pi-Stacking: C:F.145
FEG.19: 22 residues within 4Å:- Chain D: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Chain F: D.189
- Ligands: FE.16
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:W.144, D:A.171
- Hydrogen bonds: D:A.8, D:G.9, D:G.9, D:C.10, D:C.10, D:A.62, D:C.172
- Water bridges: D:H.14, D:T.129
- Salt bridges: D:D.63, D:D.131, D:H.203
- pi-Stacking: D:F.145
FEG.24: 22 residues within 4Å:- Chain D: D.189
- Chain E: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Ligands: FE.21
15 PLIP interactions:15 interactions with chain E- Hydrophobic interactions: E:W.144, E:A.171
- Hydrogen bonds: E:A.8, E:G.9, E:G.9, E:C.10, E:C.10, E:A.62, E:C.172
- Water bridges: E:H.14, E:T.129
- Salt bridges: E:D.63, E:D.131, E:H.203
- pi-Stacking: E:F.145
FEG.29: 22 residues within 4Å:- Chain E: D.189
- Chain F: L.6, G.7, A.8, G.9, C.10, T.13, H.14, A.62, D.63, P.64, P.110, P.111, D.131, W.144, F.145, P.146, I.154, A.171, C.172, H.203
- Ligands: FE.26
15 PLIP interactions:15 interactions with chain F- Hydrophobic interactions: F:W.144, F:A.171
- Hydrogen bonds: F:A.8, F:G.9, F:G.9, F:C.10, F:C.10, F:A.62, F:C.172
- Water bridges: F:H.14, F:T.129
- Salt bridges: F:D.63, F:D.131, F:H.203
- pi-Stacking: F:F.145
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 2 residues within 4Å:- Chain A: V.276, F.325
1 PLIP interactions:1 interactions with chain F- Water bridges: F:V.191
GOL.10: 2 residues within 4Å:- Chain B: V.276, F.325
1 PLIP interactions:1 interactions with chain E- Water bridges: E:V.191
GOL.15: 2 residues within 4Å:- Chain C: V.276, F.325
1 PLIP interactions:1 interactions with chain D- Water bridges: D:V.191
GOL.20: 2 residues within 4Å:- Chain D: V.276, F.325
1 PLIP interactions:1 interactions with chain C- Water bridges: C:V.191
GOL.25: 2 residues within 4Å:- Chain E: V.276, F.325
1 PLIP interactions:1 interactions with chain B- Water bridges: B:V.191
GOL.30: 2 residues within 4Å:- Chain F: V.276, F.325
1 PLIP interactions:1 interactions with chain A- Water bridges: A:V.191
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., Dioxygen Sensitivity of [Fe]-Hydrogenase in the Presence of Reducing Substrates. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-05-16
- Peptides
- 5,10-methenyltetrahydromethanopterin hydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.29 Å
- Oligo State
- homo-hexamer
- Ligands
- 18 x FE: FE (III) ION(Non-covalent)
- 6 x FEG: 5'-O-[(S)-{[2-(carboxymethyl)-6-hydroxy-3,5-dimethylpyridin-4-yl]oxy}(hydroxy)phosphoryl]guanosine(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., Dioxygen Sensitivity of [Fe]-Hydrogenase in the Presence of Reducing Substrates. Angew. Chem. Int. Ed. Engl. (2018)
- Release Date
- 2018-05-16
- Peptides
- 5,10-methenyltetrahydromethanopterin hydrogenase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
A