SMTL ID : 5okj.1

Non-conservatively refined structure of Gan1D-WT, a putative 6-phospho-beta-galactosidase from Geobacillus stearothermophilus, in the C2 spacegroup

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-dimer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.270, Q.272, W.275, W.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.270 Water bridges: A:Y.270

2 x IMD: IMIDAZOLE(Non-covalent)

IMD.2: 1 residues within 4Å: Chain A: H.69 No protein-ligand interaction detected (PLIP) IMD.3: 1 residues within 4Å: Chain A: D.398 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.398

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 9 residues within 4Å: Chain A: Q.30, H.131, W.132, N.176, E.177, Y.308, E.385, W.432, W.440 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.30, A:Q.30, A:N.176, A:E.177, A:N.306, A:Y.308 Water bridges: A:E.177, A:Y.448

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lansky, S. et al., Structural basis for enzyme bifunctionality - the case of Gan1D from Geobacillus stearothermophilus. FEBS J. (2017)

Release Date

2017-10-18

Peptides

Putative 6-phospho-beta-galactobiosidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Putative 6-phospho-beta-galactobiosidase

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