SMTL ID : 5ov5.1

Bacillus megaterium porphobilinogen deaminase D82E mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x DPM: 3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid(Covalent)

DPM.1: 17 residues within 4Å: Chain A: L.14, Q.18, S.80, K.82, E.83, T.126, S.127, S.128, R.130, R.131, R.154, L.168, A.169, A.195, Q.198, G.199, C.242 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:L.14, A:A.169 Hydrogen bonds: A:Q.18, A:E.83, A:E.83, A:E.83, A:S.127, A:S.128, A:S.128, A:A.169, A:G.199 Water bridges: A:S.128, A:R.130 Salt bridges: A:K.82, A:K.82, A:K.82, A:R.130, A:R.131, A:R.131, A:R.131, A:R.154 pi-Cation interactions: A:K.82, A:K.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, J. et al., Structural studies of domain movement in active-site mutants of porphobilinogen deaminase from Bacillus megaterium. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2017-09-06

Peptides

Porphobilinogen deaminase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Porphobilinogen deaminase