SMTL ID : 5ovl.1

crystal structure of MabA bound to NADP+ from M. smegmatis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-tetramer

Ligands

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.75, N.77, R.78, G.79, I.80, R.100, C.113, D.114, V.115, T.116, N.141, A.142, G.143, I.144, T.164, I.191, G.192, S.193, Y.206, K.210, P.236, G.237, Y.238, I.239, T.241, R.250 33 PLIP interactions: 33 interactions with chain A Hydrophobic interactions: A:I.80, A:P.236 Hydrogen bonds: A:G.75, A:N.77, A:I.80, A:D.114, A:V.115, A:N.141, A:G.143, A:K.210, A:G.237, A:I.239, A:T.241, A:R.250 Water bridges: A:G.75, A:R.78, A:R.78, A:R.78, A:G.81, A:G.81, A:R.100, A:R.100, A:R.100, A:R.100, A:R.100, A:I.144, A:S.145, A:S.145 Salt bridges: A:R.78, A:R.78, A:R.100 pi-Cation interactions: A:R.100, A:R.100 NAP.2: 25 residues within 4Å: Chain B: G.75, N.77, R.78, G.79, I.80, R.100, C.113, D.114, V.115, T.116, N.141, A.142, G.143, I.144, T.164, I.191, G.192, S.193, Y.206, K.210, P.236, G.237, Y.238, I.239, T.241 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:P.236 Hydrogen bonds: B:N.77, B:R.78, B:I.80, B:R.100, B:D.114, B:V.115, B:N.141, B:G.143, B:K.210, B:I.239, B:I.239, B:T.241 Water bridges: B:G.75, B:G.75, B:G.81, B:R.100, B:R.100, B:R.100, B:R.100, B:R.100, B:S.102, B:S.102, B:N.141, B:T.164 Salt bridges: B:R.78, B:R.78, B:R.100 pi-Cation interactions: B:R.100, B:R.100 NAP.3: 26 residues within 4Å: Chain C: G.75, N.77, R.78, G.79, I.80, R.100, C.113, D.114, V.115, T.116, N.141, A.142, G.143, I.144, T.164, I.191, G.192, S.193, Y.206, K.210, P.236, G.237, Y.238, I.239, T.241, R.250 26 PLIP interactions: 26 interactions with chain C Hydrophobic interactions: C:I.80, C:P.236 Hydrogen bonds: C:G.75, C:N.77, C:I.80, C:R.100, C:D.114, C:V.115, C:N.141, C:G.143, C:Y.206, C:K.210, C:G.237, C:I.239, C:R.250 Water bridges: C:G.75, C:R.78, C:R.78, C:G.81, C:N.141, C:I.144, C:S.145 Salt bridges: C:R.78, C:R.78, C:R.100 pi-Cation interactions: C:R.100 NAP.4: 25 residues within 4Å: Chain D: G.75, N.77, R.78, G.79, I.80, R.100, C.113, D.114, V.115, T.116, N.141, A.142, G.143, I.144, T.164, I.191, G.192, S.193, Y.206, K.210, P.236, G.237, Y.238, I.239, T.241 26 PLIP interactions: 26 interactions with chain D Hydrophobic interactions: D:I.80, D:P.236 Hydrogen bonds: D:G.75, D:N.77, D:I.80, D:D.114, D:V.115, D:N.141, D:G.143, D:Y.206, D:K.210, D:G.237, D:I.239, D:T.241 Water bridges: D:G.75, D:G.81, D:R.100, D:R.100, D:R.100, D:R.100, D:S.145 Salt bridges: D:R.78, D:R.78, D:R.100 pi-Cation interactions: D:R.100, D:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kussau, T. et al., Structural rearrangements occurring upon cofactor binding in the Mycobacterium smegmatis beta-ketoacyl-acyl carrier protein reductase MabA. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-02-28

Peptides

3-oxoacyl-[acyl-carrier-protein] reductase FabG: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier-protein] reductase FabG