SMTL ID : 5ox5.1

HIF prolyl hydroxylase 2 (PHD2/ EGLN1) in complex with CCT6, a GSK1278863-related compound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.139, D.141, H.200 Ligands: B2E.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.139, A:D.141, A:H.200, H2O.1

1 x B2E: (6-hydroxy-1,3-dimethyl-2,4-dioxo-1,2,3,4-tetrahydropyrimidine-5-carbonyl)glycine(Non-covalent)

B2E.2: 17 residues within 4Å: Chain A: D.80, I.82, M.125, A.127, Y.129, Y.136, H.139, D.141, I.153, Y.155, L.169, H.200, V.202, R.209, A.211, W.215 Ligands: MN.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Y.129, A:Y.136, A:Y.155 Water bridges: A:R.209, A:R.209 Salt bridges: A:R.209 pi-Stacking: A:Y.136

1 x BCT: BICARBONATE ION(Non-functional Binders)

BCT.3: 3 residues within 4Å: Chain A: R.138, V.140, P.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.138, A:R.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yeh, T.L. et al., Molecular and cellular mechanisms of HIF prolyl hydroxylase inhibitors in clinical trials. Chem Sci (2017)

Release Date

2017-10-18

Peptides

Egl nine homolog 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Egl nine homolog 1

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