SMTL ID : 5qak.2 (3 other biounits)

OXA-48 IN COMPLEX WITH COMPOUND 14

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x AV4: 3-[3-(dimethylamino)phenyl]benzoic acid(Non-covalent)

AV4.1: 12 residues within 4Å: Chain A: S.48, D.79, I.80, W.83, Y.95, S.96, T.187, G.188, Y.189, S.222, L.225, R.228 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.80, A:Y.189 Hydrogen bonds: A:S.96 Water bridges: A:Y.189, A:R.228 Salt bridges: A:K.186, A:R.228 pi-Stacking: A:Y.189

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: Q.171, L.174, R.184 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: F.71, K.72, W.73, D.74, R.78, P.99, V.100, E.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.74, A:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akhter, S. et al., A focused fragment library targeting the antibiotic resistance enzyme - Oxacillinase-48: Synthesis, structural evaluation and inhibitor design. Eur J Med Chem (2018)

Release Date

2018-01-10

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase

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