SMTL ID : 5qpe.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOPL000295a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.49, K.50, Y.51, F.52, R.53, Q.93 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51, A:F.52, A:Q.93, A:R.110 Water bridges: A:G.49, A:G.49, A:R.53, A:R.53, A:R.53, A:Q.93 Salt bridges: A:R.53 SO4.2: 4 residues within 4Å: Chain A: Q.23, K.27, H.143 Chain B: K.160 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Water bridges: A:W.142, A:H.143, B:K.160, B:K.160 Salt bridges: A:K.27, A:H.143, B:K.160 SO4.4: 7 residues within 4Å: Chain A: L.243, E.246, Y.326, E.329, V.330, E.333 Ligands: AWG.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.333 Water bridges: A:K.203 Salt bridges: A:K.203 SO4.7: 6 residues within 4Å: Chain B: G.49, K.50, Y.51, F.52, R.53, Q.93 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51, B:F.52, B:Q.93, B:R.110 Water bridges: B:G.49, B:G.49, B:R.53, B:R.53, B:R.53, B:Q.93 Salt bridges: B:R.53 SO4.8: 4 residues within 4Å: Chain A: K.160 Chain B: Q.23, K.27, H.143 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:W.142, B:H.143, A:K.160, A:K.160 Salt bridges: B:K.27, B:H.143, A:K.160 SO4.10: 7 residues within 4Å: Chain B: L.243, E.246, Y.326, E.329, V.330, E.333 Ligands: AWG.12 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.333 Water bridges: B:K.203, B:E.329 Salt bridges: B:K.203

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 3 residues within 4Å: Chain A: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.336 Salt bridges: A:R.239 ACT.9: 3 residues within 4Å: Chain B: R.239, S.336, L.337 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.336 Salt bridges: B:R.239

2 x ZN: ZINC ION(Non-covalent)

ZN.5: 3 residues within 4Å: Chain A: D.100, D.104, D.172 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.100, A:D.104, H2O.1, H2O.2, H2O.4 ZN.11: 3 residues within 4Å: Chain B: D.100, D.104, D.172 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.100, B:D.104, H2O.13, H2O.14, H2O.17

2 x AWG: ~{N}2-(1~{H}-benzimidazol-2-yl)benzene-1,2-diamine(Non-covalent)

AWG.6: 10 residues within 4Å: Chain A: P.199, Y.202, K.203, E.246, W.278, V.281, A.325, Y.326, E.329 Ligands: SO4.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.199, A:Y.202, A:V.281, A:E.329, A:E.329 Hydrogen bonds: A:K.203, A:E.246 Water bridges: A:K.203, A:Y.326 AWG.12: 10 residues within 4Å: Chain B: P.199, Y.202, K.203, E.246, W.278, V.281, A.325, Y.326, E.329 Ligands: SO4.10 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.199, B:Y.202, B:V.281, B:E.329, B:E.329 Hydrogen bonds: B:K.203, B:E.246 Water bridges: B:K.203, B:Y.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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