- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.46 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.3: 3 residues within 4Å:- Chain A: R.239, S.336, L.337
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.336
- Salt bridges: A:R.239
ACT.4: 3 residues within 4Å:- Chain A: V.254, M.255
- Ligands: LVV.9
No protein-ligand interaction detected (PLIP)ACT.12: 3 residues within 4Å:- Chain B: R.239, S.336, L.337
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.336
- Salt bridges: B:R.239
ACT.13: 3 residues within 4Å:- Chain B: V.254, M.255
- Ligands: LVV.18
No protein-ligand interaction detected (PLIP)- 4 x ZN: ZINC ION(Non-covalent)
ZN.5: 3 residues within 4Å:- Chain A: D.100, D.104, Q.169
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.100, A:D.104, H2O.1, H2O.3, H2O.4
ZN.6: 3 residues within 4Å:- Chain A: D.252, D.256, D.270
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.252, H2O.1, H2O.1, H2O.2, H2O.5
ZN.14: 3 residues within 4Å:- Chain B: D.100, D.104, Q.169
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.100, B:D.104, H2O.13, H2O.15, H2O.16
ZN.15: 3 residues within 4Å:- Chain B: D.252, D.256, D.270
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.252, H2O.13, H2O.14, H2O.15, H2O.18
- 6 x LVV: 4-[(4-methylphenyl)methyl]-1,4-thiazinane 1,1-dioxide(Non-covalent)
LVV.7: 12 residues within 4Å:- Chain A: Y.96, L.97, E.99, D.100, M.103, T.165, A.166, Q.169, K.209, Y.213
- Chain B: N.128, I.131
8 PLIP interactions:7 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.96, A:Y.96, A:E.99, A:D.100, A:T.165, A:Q.169, B:I.131
- Salt bridges: A:D.100
LVV.8: 7 residues within 4Å:- Chain A: L.65, A.66, V.67, T.68, Q.69, H.70, K.75
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Q.69
LVV.9: 10 residues within 4Å:- Chain A: V.254, M.255, F.258, T.259, W.278, L.279, L.319, Q.320, F.323
- Ligands: ACT.4
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.254, A:V.254, A:F.258, A:W.278, A:L.279, A:L.319, A:Q.320, A:F.323
LVV.16: 12 residues within 4Å:- Chain A: N.128, I.131
- Chain B: Y.96, L.97, E.99, D.100, M.103, T.165, A.166, Q.169, K.209, Y.213
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.96, B:Y.96, B:E.99, B:D.100, B:T.165, B:Q.169, A:I.131
- Salt bridges: B:D.100
LVV.17: 7 residues within 4Å:- Chain B: L.65, A.66, V.67, T.68, Q.69, H.70, K.75
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:Q.69
LVV.18: 10 residues within 4Å:- Chain B: V.254, M.255, F.258, T.259, W.278, L.279, L.319, Q.320, F.323
- Ligands: ACT.13
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:V.254, B:V.254, B:F.258, B:W.278, B:L.279, B:L.319, B:Q.320, B:F.323
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.46 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 6 x LVV: 4-[(4-methylphenyl)methyl]-1,4-thiazinane 1,1-dioxide(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A