SMTL ID : 5qpv.1

PanDDA analysis group deposition -- Crystal Structure of T. cruzi FPPS in complex with FMOPL000416a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.49, K.50, Y.51, R.110 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.50, A:Y.51 Water bridges: A:R.53, A:R.53 Salt bridges: A:K.50, A:R.110 SO4.2: 3 residues within 4Å: Chain A: F.19, Q.23, H.143 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.143 Salt bridges: A:K.27, A:H.143 SO4.6: 4 residues within 4Å: Chain B: G.49, K.50, Y.51, R.110 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.50, B:Y.51 Water bridges: B:R.53, B:R.53 Salt bridges: B:K.50, B:R.110 SO4.7: 3 residues within 4Å: Chain B: F.19, Q.23, H.143 3 PLIP interactions: 3 interactions with chain B Water bridges: B:H.143 Salt bridges: B:K.27, B:H.143

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 2 residues within 4Å: Chain A: D.104, Q.169 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.104, H2O.1, H2O.11 ZN.8: 2 residues within 4Å: Chain B: D.104, Q.169 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.104, H2O.13, H2O.23

4 x LWA: (2~{S})-~{N}-(4-aminocarbonylphenyl)oxolane-2-carboxamide(Non-covalent)

LWA.4: 14 residues within 4Å: Chain A: T.44, T.45, C.46, L.47, G.48, E.90, Q.93, L.97, R.109, R.110, K.112, P.113, C.114, W.115 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.97, A:R.109 Hydrogen bonds: A:T.45, A:R.110, A:P.113, A:W.115 pi-Cation interactions: A:R.109 LWA.5: 5 residues within 4Å: Chain A: D.193, F.194, F.197, L.284, K.296 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.197, A:F.197, A:K.296 LWA.9: 14 residues within 4Å: Chain B: T.44, T.45, C.46, L.47, G.48, E.90, Q.93, L.97, R.109, R.110, K.112, P.113, C.114, W.115 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.97, B:R.109 Hydrogen bonds: B:T.45, B:R.110, B:P.113, B:W.115 pi-Cation interactions: B:R.109 LWA.10: 5 residues within 4Å: Chain B: D.193, F.194, F.197, L.284, K.296 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:F.197, B:F.197, B:K.296

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published

Release Date

2020-04-29

Peptides

Farnesyl diphosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Farnesyl diphosphate synthase

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