- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
ACT.2: 3 residues within 4Å:- Chain A: R.239, S.336, L.337
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.336
- Salt bridges: A:R.239
ACT.8: 3 residues within 4Å:- Chain A: M.234, E.238
- Ligands: LX7.6
No protein-ligand interaction detected (PLIP)ACT.10: 3 residues within 4Å:- Chain B: R.239, S.336, L.337
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.336
- Salt bridges: B:R.239
ACT.16: 3 residues within 4Å:- Chain B: M.234, E.238
- Ligands: LX7.14
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.238
- 4 x ZN: ZINC ION(Non-covalent)
ZN.3: 2 residues within 4Å:- Chain A: D.100, D.104
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.100, A:D.100, A:D.104, H2O.4, H2O.6
ZN.4: 2 residues within 4Å:- Chain A: D.252, D.270
6 PLIP interactions:1 interactions with chain A, 5 Ligand-Water interactions- Metal complexes: A:D.252, H2O.1, H2O.2, H2O.6, H2O.9, H2O.9
ZN.11: 2 residues within 4Å:- Chain B: D.100, D.104
5 PLIP interactions:3 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.100, B:D.100, B:D.104, H2O.17, H2O.18
ZN.12: 2 residues within 4Å:- Chain B: D.252, D.270
6 PLIP interactions:1 interactions with chain B, 5 Ligand-Water interactions- Metal complexes: B:D.252, H2O.13, H2O.15, H2O.19, H2O.21, H2O.22
- 6 x LX7: 1-[4-(trifluoromethyloxy)phenyl]thiourea(Non-covalent)
LX7.5: 10 residues within 4Å:- Chain A: P.199, Y.202, K.203, E.246, V.250, W.278, V.281, T.282, D.322, Y.326
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:P.199, A:P.199, A:Y.202, A:V.281
- Hydrogen bonds: A:D.322, A:D.322
LX7.6: 11 residues within 4Å:- Chain A: L.157, K.160, V.161, K.207, Y.208, F.212, L.216
- Chain B: K.27, Y.28, E.29
- Ligands: ACT.8
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:Y.28, A:F.212, A:F.212
- Hydrogen bonds: B:K.27, B:K.27, A:K.207, A:Y.208
- Water bridges: A:K.160
LX7.7: 5 residues within 4Å:- Chain A: P.113, R.117, F.118, P.119
- Chain B: E.185
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:P.113, A:P.119
- pi-Stacking: A:F.118
- Hydrogen bonds: B:E.185, B:E.185
LX7.13: 10 residues within 4Å:- Chain B: P.199, Y.202, K.203, E.246, V.250, W.278, V.281, T.282, D.322, Y.326
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:P.199, B:P.199, B:Y.202, B:V.281
- Hydrogen bonds: B:D.322
LX7.14: 11 residues within 4Å:- Chain A: K.27, Y.28, E.29
- Chain B: L.157, K.160, V.161, K.207, Y.208, F.212, L.216
- Ligands: ACT.16
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain A- Hydrophobic interactions: B:F.212, B:F.212, A:Y.28
- Hydrogen bonds: B:K.207, A:K.27, A:K.27, A:E.29
- Water bridges: B:K.160
LX7.15: 5 residues within 4Å:- Chain A: E.185
- Chain B: P.113, R.117, F.118, P.119
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:E.185, A:E.185
- Hydrophobic interactions: B:P.113, B:P.119
- pi-Stacking: B:F.118
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 4 x ACT: ACETATE ION(Non-functional Binders)
- 4 x ZN: ZINC ION(Non-covalent)
- 6 x LX7: 1-[4-(trifluoromethyloxy)phenyl]thiourea(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Petrick, J.K. et al., PanDDA analysis group deposition - FPPS screened against the DSI Fragment Library. To Be Published
- Release Date
- 2020-04-29
- Peptides
- Farnesyl diphosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A