- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x SCD: SUCCINYL(CARBADETHIA)-COENZYME A(Non-covalent)
- 1 x MCD: METHYLMALONYL(CARBADETHIA)-COENZYME A(Non-covalent)
MCD.2: 31 residues within 4Å:- Chain A: Y.74, T.76, M.77, F.80, R.81, T.84, R.86, F.88, S.113, S.161, S.163, T.165, T.194, Q.196, R.206, N.235, Y.242, H.243, R.282, S.284, F.286, R.325, T.326, H.327, Q.329, Q.360, S.361
- Chain B: V.41, R.44
- Ligands: SCD.1, B12.3
41 PLIP interactions:39 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:F.88, A:F.88, A:T.165, A:Y.242, A:F.286
- Hydrogen bonds: A:Y.74, A:T.76, A:R.81, A:T.84, A:S.113, A:S.161, A:S.163, A:Q.196, A:S.284, A:S.361, B:R.44, B:R.44
- Water bridges: A:T.76, A:R.86, A:R.86, A:S.163, A:T.165, A:N.235, A:N.235, A:N.235, A:N.235, A:N.235, A:S.238, A:R.282, A:R.282, A:R.282, A:R.282, A:R.282, A:S.284, A:R.325, A:R.325
- Salt bridges: A:R.86, A:R.206, A:H.243, A:R.282
- pi-Cation interactions: A:R.81
- 1 x B12: COBALAMIN(Non-covalent)
B12.3: 46 residues within 4Å:- Chain A: F.88, A.115, F.116, L.118, H.121, A.138, V.205, R.206, T.208, Y.242, H.243, E.246, G.332, W.333, L.335, E.369, A.370, A.372, L.373, Q.453, L.601, D.607, G.608, H.609, D.610, R.611, G.612, V.615, I.616, Y.620, G.652, V.653, S.654, L.656, A.657, G.658, G.684, G.685, V.686, Y.704, T.705, P.706, T.708, S.713
- Ligands: SCD.1, MCD.2
32 PLIP interactions:32 interactions with chain A,- Hydrophobic interactions: A:L.118, A:R.206, A:Y.242, A:L.601, A:V.615, A:I.616, A:I.616, A:V.686, A:Y.704, A:Y.704
- Hydrogen bonds: A:F.116, A:A.138, A:R.206, A:G.332, A:E.369, A:Q.453, A:G.608, A:H.609, A:D.610, A:D.610, A:D.610, A:R.611, A:G.612, A:L.656, A:G.685
- Water bridges: A:R.206, A:R.206, A:L.373, A:G.707, A:G.707, A:G.707
- Metal complexes: A:H.609
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain B: E.176, V.215, D.218, W.219, R.222
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.176, B:R.222
GOL.5: 7 residues within 4Å:- Chain B: T.97, R.99, A.105, W.106, G.353, A.354, E.355
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.99, B:A.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoma, N.H. et al., Stabilization of radical intermediates by an active-site tyrosine residue in methylmalonyl-CoA mutase. Biochemistry (1998)
- Release Date
- 1998-08-12
- Peptides
- PROTEIN (METHYLMALONYL-COA MUTASE ALPHA-SUBUNIT): A
PROTEIN (METHYLMALONYL-COA MUTASE BETA-SUBUNIT): B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 1 x SCD: SUCCINYL(CARBADETHIA)-COENZYME A(Non-covalent)
- 1 x MCD: METHYLMALONYL(CARBADETHIA)-COENZYME A(Non-covalent)
- 1 x B12: COBALAMIN(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoma, N.H. et al., Stabilization of radical intermediates by an active-site tyrosine residue in methylmalonyl-CoA mutase. Biochemistry (1998)
- Release Date
- 1998-08-12
- Peptides
- PROTEIN (METHYLMALONYL-COA MUTASE ALPHA-SUBUNIT): A
PROTEIN (METHYLMALONYL-COA MUTASE BETA-SUBUNIT): B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B