SMTL ID : 5std.2 (4 other biounits)

SCYTALONE DEHYDRATASE PLUS INHIBITOR 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-12-mer

Ligands

12 x CA: CALCIUM ION(Non-covalent)

CA.1: 7 residues within 4Å: Chain A: E.155, D.156, E.159 Chain D: E.155, D.156, E.159 Ligands: CA.7 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Metal complexes: A:E.155, A:D.156, A:E.159, D:D.156, D:E.159 CA.3: 5 residues within 4Å: Chain B: E.155, D.156 Chain K: E.155, D.156 Ligands: CA.21 5 PLIP interactions: 3 interactions with chain K, 2 interactions with chain B Metal complexes: K:E.155, K:D.156, K:D.156, B:E.155, B:D.156 CA.5: 2 residues within 4Å: Chain C: R.43, D.47 3 PLIP interactions: 2 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:R.43, C:D.47, H2O.9 CA.7: 7 residues within 4Å: Chain A: E.155, D.156, E.159 Chain D: E.155, D.156, E.159 Ligands: CA.1 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain D Metal complexes: A:D.156, A:E.159, D:E.155, D:D.156, D:E.159 CA.9: 5 residues within 4Å: Chain E: E.155, D.156 Chain H: E.155, D.156 Ligands: CA.15 5 PLIP interactions: 3 interactions with chain H, 2 interactions with chain E Metal complexes: H:E.155, H:D.156, H:D.156, E:E.155, E:D.156 CA.11: 2 residues within 4Å: Chain F: R.43, D.47 3 PLIP interactions: 2 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:R.43, F:D.47, H2O.18 CA.13: 7 residues within 4Å: Chain G: E.155, D.156, E.159 Chain J: E.155, D.156, E.159 Ligands: CA.19 5 PLIP interactions: 3 interactions with chain G, 2 interactions with chain J Metal complexes: G:E.155, G:D.156, G:E.159, J:D.156, J:E.159 CA.15: 5 residues within 4Å: Chain E: E.155, D.156 Chain H: E.155, D.156 Ligands: CA.9 5 PLIP interactions: 2 interactions with chain H, 3 interactions with chain E Metal complexes: H:E.155, H:D.156, E:E.155, E:D.156, E:D.156 CA.17: 2 residues within 4Å: Chain I: R.43, D.47 3 PLIP interactions: 2 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:R.43, I:D.47, H2O.28 CA.19: 7 residues within 4Å: Chain G: E.155, D.156, E.159 Chain J: E.155, D.156, E.159 Ligands: CA.13 5 PLIP interactions: 3 interactions with chain J, 2 interactions with chain G Metal complexes: J:E.155, J:D.156, J:E.159, G:D.156, G:E.159 CA.21: 5 residues within 4Å: Chain B: E.155, D.156 Chain K: E.155, D.156 Ligands: CA.3 5 PLIP interactions: 2 interactions with chain K, 3 interactions with chain B Metal complexes: K:E.155, K:D.156, B:E.155, B:D.156, B:D.156 CA.23: 2 residues within 4Å: Chain L: R.43, D.47 3 PLIP interactions: 2 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:R.43, L:D.47, H2O.37

12 x UNN: (6,7-DIFLUORO-QUINAZOLIN-4-YL)-(1-METHYL-2,2-DIPHENYL-ETHYL)-AMINE(Non-covalent)

UNN.2: 15 residues within 4Å: Chain A: W.18, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.42, A:F.45, A:F.45, A:V.67, A:V.67, A:L.98, A:P.141, A:I.143 Hydrogen bonds: A:N.123 Water bridges: A:H.77 pi-Stacking: A:Y.42, A:F.45, A:F.154 UNN.4: 18 residues within 4Å: Chain B: W.18, Y.22, Y.42, F.45, M.61, V.62, V.67, L.68, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:Y.22, B:Y.42, B:F.45, B:V.62, B:V.67, B:V.67, B:L.68, B:L.98, B:P.141, B:I.143, B:F.150 Hydrogen bonds: B:H.77, B:N.123 pi-Stacking: B:Y.42, B:F.45, B:F.154 UNN.6: 17 residues within 4Å: Chain C: W.18, Y.22, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154 14 PLIP interactions: 14 interactions with chain C Hydrophobic interactions: C:Y.22, C:Y.42, C:F.45, C:F.45, C:V.67, C:V.67, C:L.98, C:P.141, C:I.143 Hydrogen bonds: C:H.77, C:N.123 pi-Stacking: C:Y.42, C:F.45, C:F.154 UNN.8: 15 residues within 4Å: Chain D: W.18, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:Y.42, D:F.45, D:F.45, D:V.67, D:V.67, D:L.98, D:P.141, D:I.143 Hydrogen bonds: D:N.123 Water bridges: D:H.77 pi-Stacking: D:Y.42, D:F.45, D:F.154 UNN.10: 18 residues within 4Å: Chain E: W.18, Y.22, Y.42, F.45, M.61, V.62, V.67, L.68, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:Y.22, E:Y.42, E:F.45, E:V.62, E:V.67, E:V.67, E:L.68, E:L.98, E:P.141, E:I.143, E:F.150 Hydrogen bonds: E:H.77, E:N.123 pi-Stacking: E:Y.42, E:F.45, E:F.154 UNN.12: 17 residues within 4Å: Chain F: W.18, Y.22, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154 14 PLIP interactions: 14 interactions with chain F Hydrophobic interactions: F:Y.22, F:Y.42, F:F.45, F:F.45, F:V.67, F:V.67, F:L.98, F:P.141, F:I.143 Hydrogen bonds: F:H.77, F:N.123 pi-Stacking: F:Y.42, F:F.45, F:F.154 UNN.14: 15 residues within 4Å: Chain G: W.18, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 13 PLIP interactions: 13 interactions with chain G Hydrophobic interactions: G:Y.42, G:F.45, G:F.45, G:V.67, G:V.67, G:L.98, G:P.141, G:I.143 Hydrogen bonds: G:N.123 Water bridges: G:H.77 pi-Stacking: G:Y.42, G:F.45, G:F.154 UNN.16: 18 residues within 4Å: Chain H: W.18, Y.22, Y.42, F.45, M.61, V.62, V.67, L.68, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 16 PLIP interactions: 16 interactions with chain H Hydrophobic interactions: H:Y.22, H:Y.42, H:F.45, H:V.62, H:V.67, H:V.67, H:L.68, H:L.98, H:P.141, H:I.143, H:F.150 Hydrogen bonds: H:H.77, H:N.123 pi-Stacking: H:Y.42, H:F.45, H:F.154 UNN.18: 17 residues within 4Å: Chain I: W.18, Y.22, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154 15 PLIP interactions: 15 interactions with chain I Hydrophobic interactions: I:Y.22, I:Y.42, I:F.45, I:F.45, I:V.67, I:V.67, I:L.98, I:P.141, I:I.143 Hydrogen bonds: I:H.77, I:N.123 Water bridges: I:Y.42 pi-Stacking: I:Y.42, I:F.45, I:F.154 UNN.20: 15 residues within 4Å: Chain J: W.18, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 13 PLIP interactions: 13 interactions with chain J Hydrophobic interactions: J:Y.42, J:F.45, J:F.45, J:V.67, J:V.67, J:L.98, J:P.141, J:I.143 Hydrogen bonds: J:N.123 Water bridges: J:H.77 pi-Stacking: J:Y.42, J:F.45, J:F.154 UNN.22: 18 residues within 4Å: Chain K: W.18, Y.22, Y.42, F.45, M.61, V.62, V.67, L.68, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150 16 PLIP interactions: 16 interactions with chain K Hydrophobic interactions: K:Y.22, K:Y.42, K:F.45, K:V.62, K:V.67, K:V.67, K:L.68, K:L.98, K:P.141, K:I.143, K:F.150 Hydrogen bonds: K:H.77, K:N.123 pi-Stacking: K:Y.42, K:F.45, K:F.154 UNN.24: 17 residues within 4Å: Chain L: W.18, Y.22, Y.42, F.45, M.61, V.67, L.98, V.100, H.102, A.119, S.121, N.123, L.139, P.141, I.143, F.150, F.154 15 PLIP interactions: 15 interactions with chain L Hydrophobic interactions: L:Y.22, L:Y.42, L:F.45, L:F.45, L:V.67, L:V.67, L:L.98, L:P.141, L:I.143 Hydrogen bonds: L:H.77, L:N.123 Water bridges: L:Y.42 pi-Stacking: L:Y.42, L:F.45, L:F.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wawrzak, Z. et al., High-resolution structures of scytalone dehydratase-inhibitor complexes crystallized at physiological pH. Proteins (1999)

Release Date

1999-12-29

Peptides

Scytalone dehydratase: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

G
A

H
B

I
C

J
A

K
B

L
C

Scytalone dehydratase

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