SMTL ID : 5sup.1 (2 other biounits)

Crystal structure of the Sub2-Yra1 complex in association with RNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: F.8, F.26, H.28, P.29, S.30, Q.33, K.51, G.53, L.54, G.55, K.56, T.57, D.315, R.343, F.344 Ligands: BEF.2, MG.3 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:S.30, A:Q.33, A:Q.33, A:G.53, A:L.54, A:G.55, A:K.56, A:T.57, A:T.57, A:T.57, A:D.315 Water bridges: A:Q.89, A:Q.89, A:Q.89 Salt bridges: A:K.56, A:R.343, A:R.343 pi-Stacking: A:F.26, A:F.26, A:F.344, A:F.344

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 11 residues within 4Å: Chain A: K.51, S.52, G.53, K.56, E.160, A.192, G.313, R.340, R.343 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: T.57, D.159 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, Y. et al., Structural and biochemical analyses of the DEAD-box ATPase Sub2 in association with THO or Yra1. Elife (2017)

Release Date

2017-01-18

Peptides

ATP-dependent RNA helicase SUB2: A
RNA annealing protein YRA1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

ATP-dependent RNA helicase SUB2

RNA annealing protein YRA1

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