- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x COA: COENZYME A(Non-covalent)
COA.2: 20 residues within 4Å:- Chain A: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153
- Chain B: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
13 PLIP interactions:10 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:P.125
- Hydrogen bonds: A:T.59, A:R.88, A:T.89, A:T.89, A:S.90, A:S.90, A:R.149, A:R.149, B:F.67, B:K.68
- Salt bridges: A:R.149, B:K.68
COA.6: 21 residues within 4Å:- Chain A: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain B: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153, S.156
13 PLIP interactions:10 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:V.58
- Hydrogen bonds: B:T.59, B:R.88, B:T.89, B:S.90, B:S.90, B:S.90, B:R.149, B:S.152, A:F.67, A:K.68
- Salt bridges: B:R.149, A:K.68
COA.8: 20 residues within 4Å:- Chain C: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, R.149, S.152, L.153
- Chain E: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Ligands: CL.9
12 PLIP interactions:8 interactions with chain C, 4 interactions with chain E- Hydrogen bonds: C:T.59, C:T.59, C:R.88, C:T.89, C:S.90, C:S.90, C:R.149, E:F.67, E:K.68, E:K.68
- Salt bridges: C:R.149, E:K.68
COA.11: 20 residues within 4Å:- Chain D: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153
- Chain F: G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Ligands: CL.12
14 PLIP interactions:11 interactions with chain D, 3 interactions with chain F- Hydrogen bonds: D:T.59, D:T.59, D:R.88, D:R.88, D:T.89, D:S.90, D:S.90, D:S.90, D:R.149, D:R.149, F:F.67, F:K.68
- Salt bridges: D:R.149, F:K.68
COA.14: 21 residues within 4Å:- Chain C: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain E: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149, S.152, L.153
- Ligands: CL.15
14 PLIP interactions:3 interactions with chain C, 11 interactions with chain E- Hydrogen bonds: C:F.67, C:K.68, E:T.59, E:T.59, E:R.88, E:T.89, E:S.90, E:S.90, E:R.149, E:R.149, E:S.152
- Salt bridges: C:K.68, E:R.149
- Hydrophobic interactions: E:P.125
COA.17: 19 residues within 4Å:- Chain D: V.32, G.34, L.37, L.66, F.67, K.68, E.69, P.70
- Chain F: V.58, T.59, L.60, G.87, R.88, T.89, S.90, V.118, P.125, R.149
- Ligands: CL.18
9 PLIP interactions:6 interactions with chain F, 3 interactions with chain D- Hydrogen bonds: F:T.59, F:R.88, F:T.89, F:S.90, F:S.90, F:R.149, D:F.67, D:K.68
- Salt bridges: D:K.68
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: V.58, T.59
- Chain B: N.27, G.34
Ligand excluded by PLIPCL.4: 5 residues within 4Å:- Chain A: N.27, H.33, G.34
- Chain B: V.58, T.59
Ligand excluded by PLIPCL.9: 5 residues within 4Å:- Chain C: V.58, T.59
- Chain E: N.27, G.34
- Ligands: COA.8
Ligand excluded by PLIPCL.12: 5 residues within 4Å:- Chain D: V.58, T.59
- Chain F: N.27, G.34
- Ligands: COA.11
Ligand excluded by PLIPCL.15: 5 residues within 4Å:- Chain C: N.27, G.34
- Chain E: V.58, T.59
- Ligands: COA.14
Ligand excluded by PLIPCL.18: 5 residues within 4Å:- Chain D: N.27, G.34
- Chain F: V.58, T.59
- Ligands: COA.17
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khandokar, Y.B. et al., Structural insights into GDP-mediated regulation of a bacterial acyl-CoA thioesterase. J. Biol. Chem. (2017)
- Release Date
- 2016-09-07
- Peptides
- Acyl-CoA hydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
FD
DE
EF
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 6 x COA: COENZYME A(Non-covalent)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Khandokar, Y.B. et al., Structural insights into GDP-mediated regulation of a bacterial acyl-CoA thioesterase. J. Biol. Chem. (2017)
- Release Date
- 2016-09-07
- Peptides
- Acyl-CoA hydrolase: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
CC
FD
DE
EF
A