SMTL ID : 5t6d.2 (1 other biounit)

2.10 A resolution structure of Norovirus 3CL protease in complex with the dipeptidyl inhibitor 7l (hexagonal form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x N38: 3-cyclohexyl-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-N~2~-{[3-(4-methoxyphenoxy)propyl]sulfonyl}-L- alaninamide(Covalent)

N38.1: 16 residues within 4Å: Chain A: H.37, E.61, I.116, Q.117, R.119, V.121, T.141, I.142, P.143, C.146, H.164, A.165, A.166, A.167, T.168, V.175 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:E.61, A:I.116, A:R.119, A:R.119, A:V.121, A:T.168, A:V.175 Hydrogen bonds: A:T.141, A:T.141, A:A.165, A:A.167 Water bridges: A:G.144, A:C.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Galasiti Kankanamalage, A.C. et al., Structure-based exploration and exploitation of the S4 subsite of norovirus 3CL protease in the design of potent and permeable inhibitors. Eur J Med Chem (2016)

Release Date

2016-11-23

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Genome polyprotein

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