SMTL ID : 5t8h.1

Joint X-ray/neutron structure of HIV-1 protease triple mutant (V32I,I47V,V82I) with amprenavir at pH 6.0

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x 478: {3-[(4-AMINO-BENZENESULFONYL)-ISOBUTYL-AMINO]-1-BENZYL-2-HYDROXY-PROPYL}-CARBAMIC ACID TETRAHYDRO-FURAN-3-YL ESTER(Covalent)

478.1: 31 residues within 4Å: Chain A: L.23, D.25, G.27, A.28, D.29, D.30, I.32, V.47, G.48, G.49, I.50, L.76, P.81, I.82, I.84 Chain B: R.8, L.23, D.25, G.27, A.28, D.29, D.30, I.32, V.47, G.48, G.49, I.50, L.76, P.81, I.82, I.84 24 PLIP interactions: 11 interactions with chain A, 13 interactions with chain B Hydrophobic interactions: A:L.23, A:A.28, A:I.32, A:I.82, A:I.84, B:A.28, B:I.32, B:V.47, B:I.50, B:P.81, B:I.82 Hydrogen bonds: A:G.27, A:A.28, A:D.29, A:D.30, B:D.25, B:D.30, B:D.30, B:G.49 Water bridges: A:I.50, B:D.30, B:I.50 Salt bridges: A:D.25, B:D.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gerlits, O. et al., Room Temperature Neutron Crystallography of Drug Resistant HIV-1 Protease Uncovers Limitations of X-ray Structural Analysis at 100 K. J. Med. Chem. (2017)

Release Date

2017-03-01

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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