SMTL ID : 5t8t.1

Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 16 residues within 4Å: Chain A: D.110, I.111, D.129, I.315 Chain B: H.23, P.24, D.25, D.174, K.176, S.199, T.240, R.242, F.243, D.251, K.258 Ligands: MG.2 16 PLIP interactions: 10 interactions with chain B, 6 interactions with chain A Hydrogen bonds: B:D.174, B:T.240, B:D.251 Water bridges: B:K.176, B:K.176, A:I.111, A:I.111, A:K.278, A:K.278, A:K.278, A:K.278 Salt bridges: B:H.23, B:K.176, B:K.258 pi-Stacking: B:F.243, B:F.243

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: D.25, R.257, K.258 Ligands: AMP.1 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Ligand interactions Metal complexes: B:D.25, AMP.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of a S-adenosylmethionine Synthase from Neisseria gonorrhoeae with bound AMP and Magnesium. to be published

Release Date

2016-09-28

Peptides

S-adenosylmethionine synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-adenosylmethionine synthase

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