- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)
PDC.2: 12 residues within 4Å:- Chain A: T.100, P.123, N.124, H.155, H.156, K.159, D.161, S.164, G.165, T.166, F.239
- Ligands: NAD.1
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:F.239
- Hydrogen bonds: A:T.100, A:K.159, A:D.161, A:G.165, A:T.166
- Water bridges: A:R.236, A:R.236
- Salt bridges: A:H.155, A:H.155, A:H.156, A:K.159, A:K.159
- pi-Cation interactions: A:H.155
PDC.5: 12 residues within 4Å:- Chain B: T.100, P.123, N.124, H.155, H.156, K.159, D.161, S.164, G.165, T.166, F.239
- Ligands: NAD.4
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.239
- Hydrogen bonds: B:K.159, B:G.165, B:T.166, B:T.166, B:T.166
- Water bridges: B:H.156, B:V.213, B:R.236
- Salt bridges: B:H.155, B:H.156, B:K.159, B:K.159
- pi-Cation interactions: B:H.155
PDC.10: 12 residues within 4Å:- Chain C: T.100, P.123, N.124, H.155, H.156, K.159, D.161, S.164, G.165, T.166, F.239
- Ligands: NAD.9
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:F.239
- Hydrogen bonds: C:T.100, C:K.159, C:D.161, C:G.165, C:T.166
- Water bridges: C:R.236, C:R.236
- Salt bridges: C:H.155, C:H.155, C:H.156, C:K.159, C:K.159
- pi-Cation interactions: C:H.155
PDC.13: 12 residues within 4Å:- Chain D: T.100, P.123, N.124, H.155, H.156, K.159, D.161, S.164, G.165, T.166, F.239
- Ligands: NAD.12
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:F.239
- Hydrogen bonds: D:K.159, D:G.165, D:T.166, D:T.166, D:T.166
- Water bridges: D:H.156, D:V.213, D:R.236
- Salt bridges: D:H.155, D:H.156, D:K.159, D:K.159
- pi-Cation interactions: D:H.155
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 3 residues within 4Å:- Chain A: K.19, H.23, M.237
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.19, A:H.23
SO4.6: 4 residues within 4Å:- Chain B: R.35, E.37, S.38, S.39
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.35, B:S.38, B:S.39
SO4.7: 2 residues within 4Å:- Chain B: Y.91, G.92
No protein-ligand interaction detected (PLIP)SO4.8: 2 residues within 4Å:- Chain B: T.103, E.104
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.104
- Water bridges: B:E.105
SO4.11: 3 residues within 4Å:- Chain C: K.19, H.23, M.237
2 PLIP interactions:2 interactions with chain C- Salt bridges: C:K.19, C:H.23
SO4.14: 4 residues within 4Å:- Chain D: R.35, E.37, S.38, S.39
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.35, D:S.38, D:S.39
SO4.15: 2 residues within 4Å:- Chain D: Y.91, G.92
No protein-ligand interaction detected (PLIP)SO4.16: 2 residues within 4Å:- Chain D: T.103, E.104
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:E.104
- Water bridges: D:E.105
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pote, S. et al., Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Biochim Biophys Acta Gen Subj (2021)
- Release Date
- 2017-10-18
- Peptides
- 4-hydroxy-tetrahydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
CD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x PDC: PYRIDINE-2,6-DICARBOXYLIC ACID(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pote, S. et al., Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Biochim Biophys Acta Gen Subj (2021)
- Release Date
- 2017-10-18
- Peptides
- 4-hydroxy-tetrahydrodipicolinate reductase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
AC
CD
A