SMTL ID : 5tep.1

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile (JLJ649), a Non-nucleoside Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 7AX: 7-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-2-naphthonitrile(Non-covalent)

7AX.1: 15 residues within 4Å: Chain A: P.97, L.102, K.103, K.104, K.105, V.108, V.181, Y.183, Y.190, G.192, F.229, W.231, L.236, P.238, Y.320 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:K.105, A:K.105, A:Y.183, A:Y.190, A:Y.190, A:L.236 Hydrogen bonds: A:K.104, A:K.105 pi-Stacking: A:Y.183, A:Y.190, A:W.231, A:W.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, W.G. et al., Design, Conformation, and Crystallography of 2-Naphthyl Phenyl Ethers as Potent Anti-HIV Agents. ACS Med Chem Lett (2016)

Release Date

2017-01-11

Peptides

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT: A
HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 REVERSE TRANSCRIPTASE, P66 SUBUNIT

HIV-1 REVERSE TRANSCRIPTASE, P51 SUBUNIT

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