SMTL ID : 5tqr.1

ctPRC2 in an autoinhibited conformation bound to S-adenosylmethionine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

hetero-1-1-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.546, C.567, C.574, C.579 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.567, B:C.574, B:C.579 ZN.2: 7 residues within 4Å: Chain B: C.546, C.555, C.574, C.582, C.603 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.555, B:C.574, B:C.582, B:C.603 ZN.3: 6 residues within 4Å: Chain B: C.546, C.548, C.555, C.565 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.548, B:C.555, B:C.565 ZN.4: 6 residues within 4Å: Chain B: C.504, H.506, C.510, C.516 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:H.506, B:C.510, B:C.516 ZN.5: 6 residues within 4Å: Chain B: C.510, C.528, C.534, C.539 Ligands: ZN.4, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.510, B:C.528, B:C.534, B:C.539 ZN.6: 6 residues within 4Å: Chain B: C.504, C.518, C.528, C.532 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:C.518, B:C.528, B:C.532 ZN.7: 4 residues within 4Å: Chain B: C.327, C.330, C.335, H.337 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.327, B:C.330, B:C.335, B:H.337 ZN.8: 5 residues within 4Å: Chain B: C.389, C.393, Y.394, C.434, C.444 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.389, B:C.393, B:C.434, B:C.444

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.9: 14 residues within 4Å: Chain B: L.623, C.626, G.627, Y.628, K.671, V.672, S.673, Y.674, R.696, Y.697, I.698, N.699, H.700, Y.737 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:G.627, B:Y.628, B:Y.628, B:K.671, B:S.673, B:S.673, B:Y.674, B:N.699, B:N.699, B:H.700, B:H.700, B:H.700

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bratkowski, M. et al., Polycomb repressive complex 2 in an autoinhibited state. J. Biol. Chem. (2017)

Release Date

2017-06-14

Peptides

Polycomb Protein EED: A
Histone-lysine N-methyltransferase EZH2, Polycomb protein SUZ12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polycomb Protein EED

Histone-lysine N-methyltransferase EZH2, Polycomb protein SUZ12

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