SMTL ID : 5tsq.1

Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.53 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.9, D.14, N.38, T.125, D.240 Ligands: BDR.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.9, A:D.14, A:T.125, A:D.240, H2O.1 CA.3: 6 residues within 4Å: Chain B: D.9, D.14, N.38, T.125, D.240 Ligands: BDR.4 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.9, B:D.14, B:T.125, B:D.240, H2O.12 CA.5: 6 residues within 4Å: Chain C: D.9, D.14, N.38, T.125, D.240 Ligands: BDR.6 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.9, C:D.14, C:T.125, C:D.240, H2O.23 CA.7: 6 residues within 4Å: Chain D: D.9, D.14, N.38, T.125, D.240 Ligands: BDR.8 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.9, D:D.14, D:T.125, D:D.240, H2O.33

4 x BDR: beta-D-ribofuranose(Non-covalent)

BDR.2: 13 residues within 4Å: Chain A: D.13, D.14, N.38, H.81, T.125, M.151, N.159, E.165, F.166, N.167, H.239, D.240 Ligands: CA.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.38, A:H.81, A:N.159, A:N.159, A:E.165, A:F.166, A:N.167 Water bridges: A:N.38, A:H.81 Salt bridges: A:H.81 BDR.4: 13 residues within 4Å: Chain B: D.13, D.14, N.38, H.81, T.125, M.151, N.159, E.165, F.166, N.167, H.239, D.240 Ligands: CA.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:N.38, B:H.81, B:N.159, B:N.159, B:E.165, B:F.166, B:N.167 Water bridges: B:N.38, B:H.81 Salt bridges: B:H.81 BDR.6: 13 residues within 4Å: Chain C: D.13, D.14, N.38, H.81, T.125, M.151, N.159, E.165, F.166, N.167, H.239, D.240 Ligands: CA.5 9 PLIP interactions: 9 interactions with chain C Hydrogen bonds: C:N.38, C:H.81, C:N.159, C:N.159, C:F.166, C:N.167 Water bridges: C:N.38, C:H.81 Salt bridges: C:H.81 BDR.8: 13 residues within 4Å: Chain D: D.13, D.14, N.38, H.81, T.125, M.151, N.159, E.165, F.166, N.167, H.239, D.240 Ligands: CA.7 9 PLIP interactions: 9 interactions with chain D Hydrogen bonds: D:N.38, D:H.81, D:N.159, D:N.159, D:F.166, D:N.167 Water bridges: D:N.38, D:H.81 Salt bridges: D:H.81

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bachega, J.F.R. et al., Crystal structure of IUnH from Leishmania braziliensis in complex with D-Ribose. To Be Published

Release Date

2016-12-14

Peptides

IUnH: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

IUnH