SMTL ID : 5txl.1 (1 other biounit)

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) TERNARY COMPLEX WITH A DOUBLE STRANDED DNA AND AN INCOMING DATP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)

GLC-FRU.1: 11 residues within 4Å: Chain B: V.37, W.40, D.92, R.94, E.95, K.98, K.411, E.415, E.429, W.430, F.432 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.92, B:D.92, B:R.94, B:K.411, B:W.430, B:E.95, B:E.95, B:K.98, B:K.98, B:W.430, B:W.430 Water bridges: B:E.95, B:R.94

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.112, V.113, D.187 Ligands: DTP.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.112, A:V.113, A:D.187 MG.3: 2 residues within 4Å: Chain A: D.445, D.551 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.445, A:D.551, H2O.1, H2O.5

1 x DTP: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE(Non-covalent)

DTP.4: 16 residues within 4Å: Chain A: K.67, R.74, L.76, D.112, V.113, G.114, D.115, A.116, Y.117, Q.153, M.186, D.187 Chain C: T.5, C.6 Chain D: G.21 Ligands: MG.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.117 Hydrogen bonds: A:D.115, A:A.116, A:Y.117, A:Q.153 Salt bridges: A:K.67, A:K.67, A:K.67, A:R.74, A:R.74 pi-Cation interactions: A:R.74

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: T.379, I.382 Chain B: P.41, E.415, T.416 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.379 Water bridges: B:P.41

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 5 residues within 4Å: Chain B: G.332, V.333, Y.334, K.339, E.360 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.332, B:Y.334 EDO.7: 6 residues within 4Å: Chain B: E.344, Y.358, P.361, F.362, N.364, W.442 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.364, B:N.364 EDO.8: 5 residues within 4Å: Chain C: C.6, G.7, G.8 Chain D: G.18, C.19 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Das, K. et al., Structural Insights into HIV Reverse Transcriptase Mutations Q151M and Q151M Complex That Confer Multinucleoside Drug Resistance. Antimicrob. Agents Chemother. (2017)

Release Date

2017-04-05

Peptides

HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT: A
HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HIV-1 REVERSE TRANSCRIPTASE P66 SUBUNIT

HIV-1 REVERSE TRANSCRIPTASE P51 SUBUNIT

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