SMTL ID : 5u0m.1

Fatty aldehyde dehydrogenase from Marinobacter aquaeolei VT8 and cofactor complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.08 Å

Oligo State

homo-dimer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: S.233, T.234, H.237, R.410, Y.411 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.411 EDO.2: 10 residues within 4Å: Chain A: R.65, K.67, S.68, L.69, R.72, Y.123, H.143, R.144, P.145, A.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.143, A:R.144 EDO.5: 3 residues within 4Å: Chain B: F.399, D.400, R.427 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.427

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 10 residues within 4Å: Chain A: F.157, H.160, L.161, R.287, C.288, T.289, T.444, G.445, A.446, F.452 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:R.287 Hydrogen bonds: A:C.288, A:G.445, A:A.446 Salt bridges: A:H.160, A:R.287 CIT.6: 10 residues within 4Å: Chain B: F.157, H.160, L.161, R.287, C.288, T.289, T.444, G.445, A.446, F.452 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:F.157, B:R.287 Hydrogen bonds: B:C.288, B:T.289, B:T.289, B:G.445, B:A.446 Salt bridges: B:H.160, B:R.287

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.4: 27 residues within 4Å: Chain A: F.152, G.153, P.154, Y.155, N.156, L.161, K.179, P.180, S.181, E.182, G.211, S.212, G.215, K.216, A.219, T.230, G.231, S.232, V.235, L.239, E.254, M.255, G.256, C.288, E.385, F.387, F.452 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.161, A:T.230 Hydrogen bonds: A:Y.155, A:E.182, A:E.182, A:E.182, A:S.232, A:E.254, A:E.385 Water bridges: A:M.255 NAD.7: 28 residues within 4Å: Chain B: F.152, G.153, P.154, Y.155, N.156, L.161, K.179, P.180, S.181, E.182, G.211, S.212, G.215, K.216, A.219, F.229, T.230, G.231, S.232, V.235, E.254, M.255, G.256, C.288, R.292, E.385, F.387, F.452 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.154, B:L.161, B:T.230 Hydrogen bonds: B:Y.155, B:E.182, B:E.182, B:E.182, B:S.212, B:S.232, B:M.255, B:E.385

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bertram, J.H. et al., Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket. Appl. Environ. Microbiol. (2017)

Release Date

2017-04-26

Peptides

N-succinylglutamate 5-semialdehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N-succinylglutamate 5-semialdehyde dehydrogenase

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