SMTL ID : 5u1c.1

Structure of tetrameric HIV-1 Strand Transfer Complex Intasome

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.107, H.111, C.135, C.138 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.107, A:H.111, A:C.135, A:C.138 ZN.3: 4 residues within 4Å: Chain F: H.107, H.111, C.135, C.138 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:H.107, F:H.111, F:C.135, F:C.138

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: D.159, D.211 Chain C: T.11 Chain J: G.22 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.159, A:D.159, A:D.211 MG.4: 4 residues within 4Å: Chain E: G.22 Chain F: D.159, D.211 Chain H: T.11 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:D.159, F:D.159, F:D.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Passos, D.O. et al., Cryo-EM structures and atomic model of the HIV-1 strand transfer complex intasome. Science (2017)

Release Date

2017-01-11

Peptides

HIV-1 Integrase, Sso7d chimera: ABFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

F
C

G
D

HIV-1 Integrase, Sso7d chimera