SMTL ID : 5u1q.1 (1 other biounit)

Grb7-SH2 with bicyclic peptide inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x LYS- PHE- GLU- GLY- TYR- ASP- ASN- GLU- 48V: LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-CST(Non-covalent)

LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-48V.1: 15 residues within 4Å: Chain A: R.26, S.48, N.51, V.56, K.66, H.67, Y.68, L.69, L.71, M.83, D.84, D.85, Q.87, I.106 Ligands: CL.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.56, A:Y.68, A:L.69, A:L.71 Hydrogen bonds: A:R.26, A:S.48, A:S.48, A:H.67, A:H.67, A:L.69, A:M.83, A:Q.87 Water bridges: A:R.50 LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-48V.2: 12 residues within 4Å: Chain B: R.26, K.66, H.67, Y.68, L.69, L.71, M.83, D.84, D.85, Q.87, I.106 Ligands: CL.5 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:Y.68, B:L.69, B:L.69, B:L.71 Hydrogen bonds: B:R.26, B:R.26, B:H.67, B:H.67, B:L.69, B:M.83, B:Q.87, B:Q.87

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.26, R.46 Ligands: LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-48V.1 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain B: R.26 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Ligands: LYS-PHE-GLU-GLY-TYR-ASP-ASN-GLU-48V.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, G.M. et al., Discovery, Development, and Cellular Delivery of Potent and Selective Bicyclic Peptide Inhibitors of Grb7 Cancer Target. J. Med. Chem. (2017)

Release Date

2017-11-15

Peptides

Growth factor receptor-bound protein 7: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Growth factor receptor-bound protein 7

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