SMTL ID : 5u4n.1

Crystal structure of a fructose-bisphosphate aldolase from Neisseria gonorrhoeae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 12 residues within 4Å: Chain A: E.165, H.206, G.207, K.210, G.241, S.242, S.243, N.283, I.284, D.285, T.286 Ligands: PO4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.207, A:G.241, A:S.242, A:S.243, A:D.285, A:T.286, A:T.286, A:T.286 Salt bridges: A:K.210 PO4.2: 9 residues within 4Å: Chain A: D.91, H.92, L.154, E.165, H.206, H.240, G.241, N.283 Ligands: PO4.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.241, A:N.283 Water bridges: A:N.32, A:Q.56, A:E.165 Salt bridges: A:H.92, A:H.206, A:H.240 PO4.3: 8 residues within 4Å: Chain A: A.22, H.229, P.233, N.234, T.235, H.236, G.278, R.280 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:N.234, A:T.235 Water bridges: A:D.19, A:P.233, A:N.234, A:T.235, A:R.280 Salt bridges: A:H.229, A:H.236, A:R.280 PO4.5: 12 residues within 4Å: Chain B: E.165, H.206, G.207, K.210, G.241, S.242, S.243, N.283, I.284, D.285, T.286 Ligands: PO4.6 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.207, B:G.241, B:S.242, B:S.243, B:D.285, B:T.286, B:T.286 Salt bridges: B:K.210 PO4.6: 9 residues within 4Å: Chain B: D.91, H.92, L.154, E.165, H.206, H.240, G.241, N.283 Ligands: PO4.5 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.241, B:N.283 Water bridges: B:N.32, B:Q.56, B:E.165 Salt bridges: B:H.92, B:H.206, B:H.240 PO4.7: 8 residues within 4Å: Chain B: A.22, H.229, P.233, N.234, T.235, H.236, G.278, R.280 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:N.234, B:T.235 Water bridges: B:H.229, B:P.233, B:N.234, B:R.280 Salt bridges: B:H.229, B:H.236, B:R.280

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: E.248, W.249, V.252, R.298 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.249, A:R.298, A:R.298 EDO.8: 4 residues within 4Å: Chain B: E.248, W.249, V.252, R.298 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.249, B:R.298, B:R.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a fructose-bisphosphate aldolase from Neisseria gonorrhoeae. To Be Published

Release Date

2016-12-21

Peptides

Fructose-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Fructose-1