SMTL ID : 5u8l.1

Crystal structure of EGFR kinase domain in complex with a sulfonyl fluoride probe XO44

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x O44: 4-[(4-{4-[(3-cyclopropyl-1H-pyrazol-5-yl)amino]-6-[(prop-2-yn-1-yl)carbamoyl]pyrimidin-2-yl}piperazin-1-yl)methyl]benzene-1-sulfonyl fluoride(Covalent)

O44.1: 20 residues within 4Å: Chain A: L.25, G.26, S.27, G.28, A.29, F.30, G.31, V.33, A.50, K.52, C.82, M.97, Q.98, L.99, M.100, P.101, G.103, L.151, T.161, F.163 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.25, A:V.33, A:A.50, A:L.151, A:T.161, A:F.163, A:F.163 Hydrogen bonds: A:M.100, A:M.100

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: R.143, Y.176, A.178, E.179, G.180 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.179 Salt bridges: A:R.143, A:K.167

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: T.247, I.248, D.249, R.284, Y.285 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.248, A:D.249, A:D.249, A:R.284

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, Q. et al., Broad-Spectrum Kinase Profiling in Live Cells with Lysine-Targeted Sulfonyl Fluoride Probes. J. Am. Chem. Soc. (2017)

Release Date

2017-01-25

Peptides

Epidermal growth factor receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Epidermal growth factor receptor

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