SMTL ID : 5u9e.1

Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

2 x RM4: beta-L-rhamnopyranose(Non-covalent)

RM4.1: 14 residues within 4Å: Chain A: L.5, F.10, A.21, D.22, F.29, H.32, H.34, F.36, E.38, H.72, Y.74, N.84, I.86 Ligands: NI.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.5, A:F.10, A:F.36, A:I.86 Hydrogen bonds: A:D.22, A:Y.74, A:N.84 RM4.3: 13 residues within 4Å: Chain B: L.5, F.10, A.21, F.29, H.32, H.34, F.36, E.38, H.72, Y.74, N.84, I.86 Ligands: NI.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.10, B:F.36, B:I.86 Hydrogen bonds: B:N.84, B:N.84

2 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 5 residues within 4Å: Chain A: H.32, H.34, E.38, H.72 Ligands: RM4.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.32, A:H.34, A:E.38, A:H.72 NI.4: 5 residues within 4Å: Chain B: H.32, H.34, E.38, H.72 Ligands: RM4.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.32, B:H.34, B:E.38, B:H.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J. et al., Structure of the Regulatory Domain of the AraC Family Transcriptional Activator RhaR. To Be Published

Release Date

2017-12-20

Peptides

HTH-type transcriptional activator RhaR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HTH-type transcriptional activator RhaR