- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 8 x TLA: L(+)-TARTARIC ACID(Non-covalent)
TLA.2: 12 residues within 4Å:- Chain A: Q.108, R.110, S.156, Q.158, R.163, I.166, Y.169, Y.201, L.206, N.207, L.210
- Ligands: NAP.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:Q.108, A:R.110, A:S.156, A:S.156, A:N.207, A:N.207, A:N.207
- Salt bridges: A:R.110, A:R.163
TLA.3: 6 residues within 4Å:- Chain A: A.79, E.80, H.81, H.122, R.126
- Ligands: EDO.4
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:A.79, A:E.80, A:H.81, A:R.126
- Water bridges: A:A.82, A:H.122, A:R.126, A:R.126, A:D.130
- Salt bridges: A:R.126
TLA.8: 12 residues within 4Å:- Chain B: Q.108, R.110, S.156, Q.158, R.163, I.166, Y.169, Y.201, L.206, N.207, L.210
- Ligands: NAP.7
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:Q.108, B:R.110, B:S.156, B:Q.158, B:Q.158, B:Y.201, B:Y.201, B:N.207
- Salt bridges: B:R.110, B:R.163
TLA.9: 5 residues within 4Å:- Chain B: A.79, E.80, H.81, R.126
- Ligands: EDO.11
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.81, B:R.126, B:R.126
- Water bridges: B:A.82, A:H.122, A:H.122
- Salt bridges: B:R.126
TLA.14: 12 residues within 4Å:- Chain C: Q.108, R.110, S.156, Q.158, R.163, I.166, Y.169, Y.201, L.206, N.207, L.210
- Ligands: NAP.13
10 PLIP interactions:10 interactions with chain C- Hydrogen bonds: C:Q.108, C:R.110, C:S.156, C:S.156, C:Y.169, C:N.207, C:N.207, C:N.207
- Salt bridges: C:R.110, C:R.163
TLA.15: 5 residues within 4Å:- Chain C: A.79, E.80, H.81, R.126
- Ligands: EDO.17
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:A.79, C:H.81, C:R.126, C:R.126
- Water bridges: C:A.82, C:H.122, C:R.126, C:D.130
- Salt bridges: C:R.126
TLA.20: 12 residues within 4Å:- Chain D: Q.108, R.110, S.156, Q.158, R.163, I.166, Y.169, Y.201, L.206, N.207, L.210
- Ligands: NAP.19
10 PLIP interactions:10 interactions with chain D- Hydrogen bonds: D:Q.108, D:R.110, D:Q.158, D:Q.158, D:Y.169, D:Y.201, D:Y.201, D:N.207
- Salt bridges: D:R.110, D:R.163
TLA.21: 5 residues within 4Å:- Chain D: A.79, E.80, H.81, R.126
- Ligands: EDO.22
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:H.81, D:R.126, D:R.126
- Water bridges: D:A.82, D:R.126
- Salt bridges: D:R.126
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 6 residues within 4Å:- Chain A: A.79, H.81, D.130, N.134
- Chain B: H.122
- Ligands: TLA.3
5 PLIP interactions:4 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:A.79, A:H.81, A:D.130, A:N.134, B:H.122
EDO.5: 2 residues within 4Å:- Chain A: R.62, R.65
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.62, A:R.65
- Water bridges: A:R.65
EDO.6: 2 residues within 4Å:- Chain A: R.163, W.219
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.163
EDO.10: 4 residues within 4Å:- Chain B: R.38, L.60, F.64, E.67
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.38
EDO.11: 7 residues within 4Å:- Chain A: W.121, H.122
- Chain B: A.79, H.81, D.130, N.134
- Ligands: TLA.9
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.134, B:N.134
EDO.12: 3 residues within 4Å:- Chain B: R.163, P.164, W.219
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.163, B:R.163
EDO.16: 3 residues within 4Å:- Chain C: R.38, F.64, E.67
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:R.38, C:R.38
EDO.17: 6 residues within 4Å:- Chain C: A.79, H.81, D.130, N.134
- Chain D: H.122
- Ligands: TLA.15
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:A.79, C:H.81, C:D.130, C:N.134, D:H.122
EDO.18: 5 residues within 4Å:- Chain C: T.35, R.38, G.39, E.42, C.236
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:R.38, C:E.42
- Water bridges: C:T.35, C:R.38
EDO.22: 6 residues within 4Å:- Chain C: H.122
- Chain D: A.79, H.81, D.130, N.134
- Ligands: TLA.21
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:H.81, D:N.134, D:N.134, C:H.122
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abendroth, J. et al., Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate. TO BE PUBLISHED
- Release Date
- 2017-01-18
- Peptides
- Gluconate 5-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.65 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 8 x TLA: L(+)-TARTARIC ACID(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Abendroth, J. et al., Crystal structure of a gluconate 5-dehydrogenase from Burkholderia cenocepacia J2315 in complex with NADP and tartrate. TO BE PUBLISHED
- Release Date
- 2017-01-18
- Peptides
- Gluconate 5-dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D