SMTL ID : 5ucr.1

Crystal Structure of a Pantoate-beta-alanine Ligase from Neisseria gonorrhoeae with bound AMPPNP and Alanine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 21 residues within 4Å: Chain A: P.31, T.32, M.33, H.37, G.39, H.40, L.43, F.150, G.151, K.153, D.154, Q.157, D.178, T.179, G.180, L.188, S.189, S.190, R.191 Ligands: ALA.2, MG.3 19 PLIP interactions: 1 Ligand-Ligand interactions, 18 interactions with chain A Hydrogen bonds: A.2, A:M.33, A:G.151, A:K.153, A:D.154, A:D.154, A:Q.157, A:G.180, A:L.188, A:L.188, A:S.189, A:S.190, A:S.190, A:R.191, A:R.191, A:R.191, A:R.191 Water bridges: A:R.125 Salt bridges: A:H.40 ANP.4: 19 residues within 4Å: Chain B: T.32, M.33, H.37, G.39, H.40, L.43, F.150, G.151, K.153, D.154, Q.157, D.178, T.179, G.180, L.188, S.189, S.190, R.191 Ligands: ALA.5 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:M.33, B:G.151, B:K.153, B:D.154, B:D.154, B:D.154, B:Q.157, B:G.180, B:G.180, B:L.188, B:S.189, B:S.190, B:S.190, B:R.191 Water bridges: B:P.31 Salt bridges: B:H.40

3 x ALA: ALANINE(Non-covalent)

ALA.2: 6 residues within 4Å: Chain A: P.31, T.32, M.33, V.136, Q.157 Ligands: ANP.1 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:P.31 ALA.5: 7 residues within 4Å: Chain B: P.31, M.33, Q.64, V.135, V.136, Q.157 Ligands: ANP.4 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.64, B:Q.157 ALA.6: 3 residues within 4Å: Chain B: E.228, Y.244, V.245 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Ligand interactions Hydrogen bonds: B:E.228, B:V.245, B:V.245, A.6

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: M.33, G.34, H.40, S.190 Ligands: ANP.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.34, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dranow, D.M. et al., Crystal Structure of a Pantoate-beta-alanine Ligase from Neisseria gonorrhoeae with bound AMPPNP and Alanine. to be published

Release Date

2017-01-11

Peptides

Pantothenate synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Pantothenate synthetase