SMTL ID : 5ucz.1

Class II fructose-1,6-bisphosphate aldolase E149A variant of Helicobacter pylori with DHAP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

homo-dimer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 10 residues within 4Å: Chain A: Q.47, H.80, D.82, H.83, M.102, E.132, H.210, K.251, N.253 Ligands: 13P.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.80, A:E.132, A:H.210, A:K.251, A:N.253 NA.5: 9 residues within 4Å: Chain B: Q.47, H.80, D.82, H.83, M.102, E.132, H.210, K.251, N.253 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.80, B:D.82, B:D.82, B:K.251, B:N.253

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.83, E.134, H.180, H.210 Ligands: ZN.3 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.83, A:E.134, A:E.134, A:H.210 ZN.3: 5 residues within 4Å: Chain A: H.83, H.180, H.210 Ligands: ZN.2, 13P.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.83, A:H.180, A:H.210 ZN.6: 5 residues within 4Å: Chain B: H.83, H.180, H.210 Ligands: ZN.7, 13P.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.83, B:H.180, B:H.210, H2O.6 ZN.7: 6 residues within 4Å: Chain B: H.83, H.180, H.210, N.253 Ligands: ZN.6, 13P.8 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.83, B:H.180, B:H.210

2 x 13P: 1,3-DIHYDROXYACETONEPHOSPHATE(Non-covalent)

13P.4: 18 residues within 4Å: Chain A: N.23, Q.47, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, D.257 Ligands: NA.1, ZN.3 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:D.82, A:H.83, A:G.181, A:G.211, A:A.212, A:S.213, A:S.213, A:N.253, A:D.255, A:T.256, A:T.256, A:T.256, A:T.256 Salt bridges: A:K.184 13P.8: 18 residues within 4Å: Chain B: N.23, Q.47, D.82, H.83, H.180, G.181, K.184, H.210, G.211, A.212, S.213, N.253, T.254, D.255, T.256, D.257 Ligands: ZN.6, ZN.7 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:D.82, B:G.181, B:G.211, B:A.212, B:S.213, B:S.213, B:S.213, B:N.253, B:D.255, B:T.256, B:T.256, B:T.256 Water bridges: B:N.23, B:D.255 Salt bridges: B:K.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jacques, B. et al., Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases. J. Biol. Chem. (2018)

Release Date

2018-04-11

Peptides

Fructose-bisphosphate aldolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fructose-bisphosphate aldolase

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