SMTL ID : 5uf1.1 (1 other biounit)

Crystal Structure of Variable Lymphocyte Receptor (VLR) O13 in complex with H-trisaccharide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

monomer

Ligands

1 x NAG- GAL- FUC: alpha-L-fucopyranose-(1-2)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-FUC.1: 14 residues within 4Å: Chain A: W.64, A.88, D.90, Y.112, S.115, L.136, C.138, C.139, A.159, D.161, Q.162, Y.183, F.185, W.213 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.115, A:Q.162, A:D.161, A:Q.162, A:D.90 Water bridges: A:C.138, A:D.90, A:D.90, A:W.213 Hydrophobic interactions: A:W.64, A:A.88, A:Y.112

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: M.197, N.201 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Collins, B.C. et al., Structural Insights into VLR Fine Specificity for Blood Group Carbohydrates. Structure (2017)

Release Date

2017-10-18

Peptides

O13: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

O13

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