SMTL ID : 5uf2.1

Crystal Structure of ribose 5 phosphate isomerase A from Neisseria gonorrhoeae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: G.104, G.105, G.106, G.107, A.108, E.112 Ligands: EDO.6 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.104, A:G.106, A:G.107, A:A.108, A:E.112

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: K.16, G.38, S.39, T.40, K.130 Ligands: EDO.6 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.39, A:T.40, A:T.40 Water bridges: A:T.37, A:S.39, A:S.39, A:I.41, A:G.91, A:A.92, A:G.106 Salt bridges: A:K.16, A:K.130

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.3: 10 residues within 4Å: Chain A: A.116, S.117, S.119, E.120, K.121, F.122, R.209, D.210, A.211, D.213 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.116, A:E.120, A:R.209, A:D.210, A:A.211 Salt bridges: A:D.213

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 1 residues within 4Å: Chain A: S.150 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.150, A:S.150 Water bridges: A:R.154 EDO.5: 3 residues within 4Å: Chain A: G.52, K.53, K.54 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.49, A:D.73 EDO.6: 10 residues within 4Å: Chain A: T.37, D.90, G.91, A.92, D.93, K.103, G.104, E.112 Ligands: NA.1, PO4.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.37, A:G.91, A:D.93, A:G.104 EDO.7: 4 residues within 4Å: Chain A: E.31, Y.32, G.84, A.86 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.32 Water bridges: A:S.83 EDO.8: 5 residues within 4Å: Chain A: S.60, T.61, S.62, N.111, F.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.111 Water bridges: A:S.62, A:Y.173 EDO.9: 6 residues within 4Å: Chain A: M.159, G.160, G.182, L.183, N.184, M.191 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.182, A:N.184 EDO.10: 4 residues within 4Å: Chain A: N.196, V.201, L.202, E.203 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.201 EDO.11: 3 residues within 4Å: Chain A: G.66, E.67, A.70 No protein-ligand interaction detected (PLIP) EDO.12: 6 residues within 4Å: Chain A: E.128, Y.131, L.217, T.219, K.224, I.226 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.128, A:E.128, A:K.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of ribose 5 phosphate isomerase A from Neisseria gonorrhoeae. to be published

Release Date

2017-01-18

Peptides

Ribose-5-phosphate isomerase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Ribose-5-phosphate isomerase A