SMTL ID : 5uhx.1

Structure of cellulase Cel5C_1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

13 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 10 residues within 4Å: Chain A: G.12, K.13, L.14, Y.103, K.140, H.141, V.142, L.143, K.178, I.179 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.12, A:L.14, A:I.179 EDO.2: 10 residues within 4Å: Chain A: V.16, G.18, T.19, V.204, M.205, Y.206, G.230, L.231, A.232 Ligands: EDO.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.18, A:A.232 EDO.3: 8 residues within 4Å: Chain A: Q.30, R.32, M.258, D.262, W.268, K.306, Q.309 Ligands: EDO.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.30, A:W.268 Water bridges: A:R.32, A:R.32 EDO.4: 5 residues within 4Å: Chain A: K.284, V.296, S.297, E.298, Q.301 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.284, A:Q.301 EDO.5: 6 residues within 4Å: Chain A: P.28, K.265, K.311, S.312, Y.313, E.314 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.265, A:K.311 EDO.6: 3 residues within 4Å: Chain A: K.276, P.277 Ligands: 1PE.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.276 EDO.7: 3 residues within 4Å: Chain A: K.156, A.158, D.159 No protein-ligand interaction detected (PLIP) EDO.8: 7 residues within 4Å: Chain A: N.255, M.258, D.259, D.262, K.306, Q.309 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.306 EDO.9: 6 residues within 4Å: Chain A: D.84, D.85, N.87, A.88, D.91, Y.131 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.84, A:D.84, A:N.87, A:A.88 EDO.10: 6 residues within 4Å: Chain A: P.198, L.199, K.229, G.230, L.231 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.199 EDO.11: 9 residues within 4Å: Chain A: Y.68, L.111, N.148, Y.211, E.237, A.243, G.245, W.271 Ligands: EDO.12 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.211 EDO.12: 9 residues within 4Å: Chain A: H.37, Y.68, S.244, G.245, W.271, K.276, E.278, S.280 Ligands: EDO.11 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.37, A:W.271, A:S.280 EDO.13: 9 residues within 4Å: Chain A: Q.189, T.214, H.215, T.216, Q.217, Y.218, L.219, K.222 Ligands: MES.16 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.189, A:T.216, A:Y.218, A:L.219

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.14: 7 residues within 4Å: Chain A: P.43, W.80, K.81, D.85, A.88, Y.89, N.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.81 1PE.15: 6 residues within 4Å: Chain A: W.41, F.42, W.72, K.276, P.277 Ligands: EDO.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.276

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.16: 5 residues within 4Å: Chain A: T.216, Q.217, Y.218, D.221 Ligands: EDO.13 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.217, A:Y.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naas, A.E. et al., Structure of the AC2a Bacteroidetes cellulase. To Be Published

Release Date

2017-11-22

Peptides

Carbohydrate-active enzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbohydrate-active enzyme

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