SMTL ID : 5uj0.1

Structure of T4Pnkp 3' phosphatase covalently bound to BeF3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.9, D.11, D.122 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.11, A:D.122, H2O.1, H2O.1 MG.2: 4 residues within 4Å: Chain B: D.9, D.11, D.121, D.122 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.11, B:D.122, H2O.3, H2O.4

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain B: K.2, W.107, I.133, V.135 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.2, B:K.2, B:G.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shuman, S. et al., Truncated T4Pnk covalently bound to BeF3. To Be Published

Release Date

2017-02-08

Peptides

Polynucleotide kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Polynucleotide kinase