SMTL ID : 5ulv.1

Malate dehydrogenase from Methylobacterium extorquens

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 1 residues within 4Å: Chain A: E.287 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.287, A:E.287, H2O.10, H2O.10 CA.2: 1 residues within 4Å: Chain A: E.166 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.166, H2O.2, H2O.13, H2O.29, H2O.32 CA.3: 1 residues within 4Å: Chain B: E.287 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.287, B:E.287, H2O.24, H2O.24 CA.4: 1 residues within 4Å: Chain B: E.166 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.166, H2O.15, H2O.27, H2O.42, H2O.45 CA.5: 1 residues within 4Å: Chain C: E.287 4 PLIP interactions: 2 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.287, C:E.287, H2O.37, H2O.37 CA.6: 1 residues within 4Å: Chain C: E.166 5 PLIP interactions: 1 interactions with chain C, 4 Ligand-Water interactions Metal complexes: C:E.166, H2O.1, H2O.4, H2O.29, H2O.40 CA.7: 1 residues within 4Å: Chain D: E.287 4 PLIP interactions: 2 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.287, D:E.287, H2O.51, H2O.51 CA.8: 1 residues within 4Å: Chain D: E.166 5 PLIP interactions: 1 interactions with chain D, 4 Ligand-Water interactions Metal complexes: D:E.166, H2O.15, H2O.18, H2O.42, H2O.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, J.M. et al., Conformational changes on substrate binding revealed by structures of Methylobacterium extorquens malate dehydrogenase. Acta Crystallogr F Struct Biol Commun (2018)

Release Date

2017-02-08

Peptides

Malate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Malate dehydrogenase

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