SMTL ID : 5unc.1

The crystal structure of PHOSPHOENOLPYRUVATE PHOSPHOMUTASE from Streptomyces platensis subsp. rosaceus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-tetramer

Ligands

5 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 12 residues within 4Å: Chain A: W.56, S.58, G.59, L.60, D.70, D.97, K.132, N.134, S.135, R.170, A.249, N.250 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.59, A:L.60, A:D.70, A:D.97, A:K.132, A:S.135, A:R.170, A:R.170, A:N.250 Water bridges: A:D.97, A:E.126 Salt bridges: A:K.132, A:R.170 TLA.4: 11 residues within 4Å: Chain B: W.56, S.58, G.59, L.60, D.70, D.97, K.132, S.135, R.170, A.249, N.250 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:W.56, B:G.59, B:L.60, B:D.97, B:K.132, B:S.135, B:R.170, B:N.250 Salt bridges: B:K.132, B:R.170 TLA.6: 12 residues within 4Å: Chain C: W.56, S.58, G.59, L.60, D.70, D.97, K.132, N.134, S.135, R.170, A.249, N.250 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:G.59, C:L.60, C:D.70, C:D.70, C:D.97, C:K.132, C:N.134, C:S.135, C:R.170, C:R.170, C:N.250 Water bridges: C:D.97, C:E.126 Salt bridges: C:K.132, C:R.170 TLA.7: 2 residues within 4Å: Chain C: R.216, H.218 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.216 Water bridges: C:E.188, C:E.188 Salt bridges: C:R.216, C:H.218 TLA.10: 12 residues within 4Å: Chain D: W.56, S.58, G.59, L.60, D.70, D.97, K.132, N.134, S.135, R.170, A.249, N.250 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:W.56, D:G.59, D:L.60, D:D.70, D:D.97, D:K.132, D:N.134, D:S.135, D:R.170, D:N.250 Salt bridges: D:K.132, D:R.170

4 x XYS: alpha-D-xylopyranose(Non-covalent)

XYS.2: 10 residues within 4Å: Chain A: H.39, N.40, L.42, G.43, L.46 Chain B: H.39, G.256, I.257, V.260 Ligands: XYS.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.40, A:N.40, A:G.43 XYS.3: 10 residues within 4Å: Chain A: H.39, G.256, I.257, V.260 Chain B: H.39, N.40, L.42, G.43, L.46 Ligands: XYS.2 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:H.39, B:N.40, B:G.43 Water bridges: B:H.39, B:N.40 XYS.9: 10 residues within 4Å: Chain C: H.39, N.40, L.42, G.43, L.46 Chain D: H.39, G.256, I.257, V.260 Ligands: XYS.11 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:N.40, C:N.40, C:G.43 Water bridges: C:N.40 XYS.11: 10 residues within 4Å: Chain C: H.39, G.256, I.257, V.260 Chain D: H.39, N.40, L.42, G.43, L.46 Ligands: XYS.9 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.40, D:N.40, D:G.43 Water bridges: D:N.40

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 4 residues within 4Å: Chain A: F.287 Chain B: F.136, I.137, P.138 No protein-ligand interaction detected (PLIP) FMT.8: 5 residues within 4Å: Chain C: E.277, D.278, I.280, P.282 Chain D: Q.258 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:Q.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of PHOSPHOENOLPYRUVATE PHOSPHOMUTASE from Streptomyces platensis subsp. rosaceus. To Be Published

Release Date

2017-02-22

Peptides

PHOSPHOENOLPYRUVATE PHOSPHOMUTASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PHOSPHOENOLPYRUVATE PHOSPHOMUTASE