SMTL ID : 5unl.1

Crystal structure of a D-beta-hydroxybutyrate dehydrogenase from Burkholderia multivorans

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-tetramer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: R.214, M.225, R.228, Y.229, L.273 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.214, A:R.228, A:L.273, A:L.273 EDO.2: 4 residues within 4Å: Chain A: A.90, A.91, T.92, G.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.92 EDO.3: 3 residues within 4Å: Chain A: G.20, R.22, R.46 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.20, A:R.22, A:R.46 EDO.4: 2 residues within 4Å: Chain A: L.34, R.63 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.63 EDO.5: 5 residues within 4Å: Chain A: I.220, G.221, Y.222, D.223, E.224 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.221, A:D.223, A:E.224, A:E.224 Water bridges: A:Y.222 EDO.7: 8 residues within 4Å: Chain B: S.156, V.157, Y.163, R.166, G.200, I.201, I.207, V.210 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.156, B:Y.163, B:R.166, B:R.166 Water bridges: B:Y.169 EDO.8: 5 residues within 4Å: Chain B: R.214, M.225, R.228, Y.229, L.273 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.214, B:R.228, B:L.273 EDO.9: 10 residues within 4Å: Chain C: Y.18, L.21, D.97, V.98, S.145, H.147, G.149, A.150, C.252, H.257 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:D.97, C:S.145, C:G.149, C:H.257 Water bridges: C:S.253 EDO.10: 5 residues within 4Å: Chain C: A.90, A.91, T.92, L.93, G.94 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.91 EDO.11: 5 residues within 4Å: Chain C: R.214, M.225, R.228, Y.229, L.273 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:R.214, C:R.228, C:L.273, C:L.273

1 x NO3: NITRATE ION(Non-functional Binders)

NO3.6: 6 residues within 4Å: Chain A: Y.163, R.166, Y.169, I.201, I.207, V.210 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.163, A:Y.163, A:R.166 Water bridges: A:R.166, A:Y.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mayclin, S.J. et al., Crystal structure of a D-beta-hydroxybutyrate dehydrogenase from Burkholderia multivorans. TO BE PUBLISHED

Release Date

2017-02-15

Peptides

3-ketoacyl-ACP reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-ketoacyl-ACP reductase