SMTL ID : 5usw.1 (1 other biounit)

The crystal structure of 7,8-dihydropteroate synthase from Vibrio fischeri ES114

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: H.143, Q.145, L.160, I.164, P.189, K.195, H.199, F.210 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.143, A:Q.145, A:P.189, A:P.189, A:H.199 GOL.2: 3 residues within 4Å: Chain A: E.48, R.91, F.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.48, A:E.48, A:R.91 Water bridges: A:R.91 GOL.3: 6 residues within 4Å: Chain A: N.118, D.188, F.193, G.220, K.224, R.258 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.118, A:N.118, A:G.220, A:K.224 Water bridges: A:G.220 GOL.6: 9 residues within 4Å: Chain B: H.143, Q.145, L.160, I.164, P.189, K.195, H.199, L.203, F.210 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.143, B:Q.145, B:Q.145, B:P.189, B:H.199 Water bridges: B:K.195 GOL.7: 5 residues within 4Å: Chain B: A.3, M.4, H.211, G.253, Q.255 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.3, B:H.211 Water bridges: B:G.253, B:Q.255

4 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 1 residues within 4Å: Chain A: N.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.10 FMT.8: 6 residues within 4Å: Chain B: M.142, D.188, F.193, G.220, K.224, R.258 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.188, B:K.224 Water bridges: B:T.65, B:N.118, B:G.220 FMT.9: 4 residues within 4Å: Chain B: K.11, H.89, F.92, D.93 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.11, B:H.89, B:H.89 FMT.10: 3 residues within 4Å: Chain B: K.195, T.196, L.197 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:L.197

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: R.223, P.235, K.236, A.238, L.239, D.261 2 PLIP interactions: 2 interactions with chain A Water bridges: A:L.239 Salt bridges: A:R.223

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of 7,8-dihydropteroate synthase from Vibrio fischeri ES114. To Be Published

Release Date

2017-02-22

Peptides

Dihydropteroate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dihydropteroate synthase

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