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SMTL ID : 5uug.1

Bacillus cereus DNA glycosylase AlkD bound to a yatakemycin-adenine nucleobase adduct and DNA containing an abasic site (9-mer product complex)

Coordinates
PDB Format
Method
X-RAY DIFFRACTION 1.71 Å
Oligo State
monomer
Ligands
1 x DA- DG- DG- DC- DA- ORP- DA- DG- DC: DNA (5'-D(*AP*GP*GP*CP*AP*(ORP)P*AP*GP*C)-3')(Non-covalent)
1 x DT- DG- DC- DT- DT- DT- DG- DC- DC: DNA (5'-D(*TP*GP*CP*TP*TP*TP*GP*CP*C)-3')(Non-covalent)
1 x CA: CALCIUM ION(Non-covalent)
1 x YTA: yatakemycin-adenine nucleobase adduct(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Mullins, E.A. et al., Toxicity and repair of DNA adducts produced by the natural product yatakemycin. Nat. Chem. Biol. (2017)
Release Date
2017-07-19
Peptides
DNA-7-methylguanine glycosylase: A
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A

DNA-7-methylguanine glycosylase

Related Entries With Identical Sequence

5cl4.1 | 5cl5.1 | 5cl6.1 | 5cl7.1 | 5cl8.1 | 5cl9.1 | 5cla.1 | 5clb.1 | 5clc.1 | 5cld.1 | 5cle.1 | 5kub.1 | 5uuf.1 | 5uuh.1 | 7lxh.1 | 7lxj.1