This entry has been superseded by
7MTU
on June 9, 2021, midnight.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8N1: N-{2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenyl}-beta-D-xylofuranosylamine(Non-covalent)
8N1.2: 16 residues within 4Å:- Chain A: T.149, A.150, H.151, S.154, V.157, T.207, M.288, G.289, M.294, E.313
- Chain C: L.50, P.51, A.338, G.341, Y.342
- Ligands: IMP.1
9 PLIP interactions:7 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:A.150, A:E.313, C:P.51, C:Y.342
- Hydrogen bonds: A:T.149, A:H.151, A:S.154, A:E.313, A:E.313
8N1.6: 18 residues within 4Å:- Chain A: L.50, P.51, A.338, G.341, Y.342
- Chain B: V.126, T.149, A.150, H.151, S.154, V.157, T.207, M.288, G.289, M.294, V.311, E.313
- Ligands: IMP.5
10 PLIP interactions:7 interactions with chain B, 3 interactions with chain A- Hydrophobic interactions: B:A.150, B:E.313, A:P.51, A:A.338, A:Y.342
- Hydrogen bonds: B:H.151, B:S.154, B:S.154, B:E.313, B:E.313
8N1.10: 18 residues within 4Å:- Chain C: V.126, T.149, A.150, H.151, S.154, V.157, T.207, M.288, G.289, M.294, V.311, E.313
- Chain D: L.50, P.51, A.338, G.341, Y.342
- Ligands: IMP.9
12 PLIP interactions:3 interactions with chain D, 9 interactions with chain C- Hydrophobic interactions: D:P.51, D:A.338, D:Y.342, C:A.150
- Hydrogen bonds: C:T.149, C:H.151, C:H.151, C:S.154, C:E.313, C:E.313
- Water bridges: C:S.154, C:G.156
8N1.13: 16 residues within 4Å:- Chain B: P.51, G.341, Y.342
- Chain D: V.126, T.149, A.150, H.151, S.154, V.157, T.207, M.288, G.289, M.294, V.311, E.313
- Ligands: IMP.12
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: D:A.150, D:E.313, D:E.313, B:P.51
- Hydrogen bonds: D:T.149, D:H.151, D:S.154, D:E.313, D:E.313
- 5 x K: POTASSIUM ION(Non-covalent)
K.3: 8 residues within 4Å:- Chain A: E.367, S.368, H.369, P.370
- Chain B: G.200, P.201, G.202, C.205
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Metal complexes: B:G.202, B:C.205, A:E.367, A:S.368, A:H.369
K.4: 7 residues within 4Å:- Chain A: G.200, P.201, G.202, C.205
- Chain C: E.367, S.368, H.369
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Metal complexes: A:G.200, A:G.202, A:C.205, C:E.367, C:S.368
K.7: 6 residues within 4Å:- Chain B: E.367, S.368, H.369
- Chain D: G.200, G.202, C.205
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Metal complexes: D:G.200, D:G.202, D:C.205, B:E.367, B:S.368
K.11: 7 residues within 4Å:- Chain C: G.200, P.201, G.202, C.205
- Chain D: E.367, S.368, H.369
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Metal complexes: D:E.367, D:S.368, C:G.200, C:G.202, C:C.205
K.16: 4 residues within 4Å:- Chain D: A.268, E.269, S.270, G.272
No protein-ligand interaction detected (PLIP)- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase fromBacillus anthracis in the complex with IMP and the inhibitor P221. To Be Published
- Release Date
- 2017-03-08
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H