- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8LA: N-[4-chloro-3-(alpha-D-ribofuranosyloxy)phenyl]-N'-{2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}urea(Non-covalent)
8LA.2: 20 residues within 4Å:- Chain A: V.103, T.126, A.127, H.128, S.131, G.133, V.134, T.184, M.265, G.266, M.271, V.288, E.290
- Chain C: V.26, L.27, P.28, S.315, G.318, Y.319
- Ligands: IMP.1
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:A.127, C:P.28, C:Y.319
- Hydrogen bonds: A:T.126, A:T.126, A:A.127, A:H.128, A:H.128, A:S.131, A:G.133, A:V.134, A:E.290, A:E.290
8LA.5: 19 residues within 4Å:- Chain A: V.26, L.27, P.28, S.315, G.318, Y.319
- Chain B: T.126, A.127, H.128, S.131, G.133, V.134, T.184, M.265, G.266, M.271, V.288, E.290
- Ligands: IMP.4
14 PLIP interactions:2 interactions with chain A, 12 interactions with chain B- Hydrophobic interactions: A:P.28, A:Y.319, B:A.127
- Hydrogen bonds: B:T.126, B:T.126, B:A.127, B:H.128, B:H.128, B:S.131, B:G.133, B:V.134, B:E.290, B:E.290
- Water bridges: B:K.132
8LA.10: 19 residues within 4Å:- Chain C: V.103, T.126, A.127, H.128, S.131, G.133, V.134, T.184, M.265, G.266, M.271, V.288, E.290
- Chain D: L.27, P.28, S.315, G.318, Y.319
- Ligands: IMP.9
12 PLIP interactions:10 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:T.126, C:T.126, C:A.127, C:H.128, C:S.131, C:G.133, C:V.134, C:E.290, C:E.290
- Water bridges: C:K.132
- Hydrophobic interactions: D:P.28, D:Y.319
8LA.14: 19 residues within 4Å:- Chain B: V.26, L.27, P.28, S.315, G.318, Y.319
- Chain D: T.126, A.127, H.128, S.131, G.133, V.134, T.184, M.265, G.266, M.271, V.288, E.290
- Ligands: IMP.13
18 PLIP interactions:4 interactions with chain B, 14 interactions with chain D- Hydrophobic interactions: B:P.28, B:Y.319, B:Y.319, D:A.127, D:E.290
- Water bridges: B:S.315, D:K.132, D:E.290
- Hydrogen bonds: D:T.126, D:T.126, D:A.127, D:H.128, D:H.128, D:S.131, D:G.133, D:V.134, D:E.290, D:E.290
- 3 x K: POTASSIUM ION(Non-covalent)
K.3: 7 residues within 4Å:- Chain A: G.177, P.178, G.179, C.182
- Chain C: E.344, S.345, H.346
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Metal complexes: A:G.177, A:G.179, A:C.182, C:E.344
K.7: 7 residues within 4Å:- Chain B: E.344, S.345, H.346
- Chain D: G.177, P.178, G.179, C.182
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain D- Metal complexes: B:E.344, B:S.345, D:G.177, D:G.179, D:C.182
K.12: 7 residues within 4Å:- Chain C: G.177, P.178, G.179, C.182
- Chain D: E.344, S.345, H.346
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain C- Metal complexes: D:E.344, D:S.345, C:G.177, C:G.179, C:C.182
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.6: 7 residues within 4Å:- Chain A: V.335
- Chain B: K.9, A.156, T.157, P.158, V.192, D.200
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:T.157, B:P.158, B:V.192, B:D.200, A:V.335
- Hydrogen bonds: B:K.9, B:K.9, B:D.200
MPD.15: 6 residues within 4Å:- Chain B: V.20
- Chain D: L.8, K.9, A.156, P.158, D.200
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:D.200
- Hydrogen bonds: D:D.200, D:D.200
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Maltseva, N. et al., Crystal Structure of Inosine 5'-monophosphate Dehydrogenase fromClostridium perfringens Complexed with IMP and P178. To Be Published
- Release Date
- 2017-03-08
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8LA: N-[4-chloro-3-(alpha-D-ribofuranosyloxy)phenyl]-N'-{2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}urea(Non-covalent)
- 3 x K: POTASSIUM ION(Non-covalent)
- 2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 1 x FMT: FORMIC ACID(Non-functional Binders)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Maltseva, N. et al., Crystal Structure of Inosine 5'-monophosphate Dehydrogenase fromClostridium perfringens Complexed with IMP and P178. To Be Published
- Release Date
- 2017-03-08
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D