SMTL ID : 5uxm.1

Type II DAH7PS from Pseudomonas aeruginosa with Trp bound

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.54 Å

Oligo State

homo-tetramer

Ligands

4 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.1: 11 residues within 4Å: Chain A: R.113, P.121, W.268, G.270, D.271, R.272, K.294, R.325, H.357, E.399 Ligands: CO.5 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:P.121 Hydrogen bonds: A:D.271 Water bridges: A:Q.117, A:E.239, A:R.272, A:R.272, A:R.272, A:K.294, A:R.325 Salt bridges: A:R.113, A:R.272, A:K.294, A:K.294, A:R.325, A:H.357, A:H.357 PEP.8: 11 residues within 4Å: Chain B: R.113, P.121, W.268, G.270, D.271, R.272, K.294, R.325, H.357, E.399 Ligands: CO.12 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:P.121 Hydrogen bonds: B:D.271 Water bridges: B:Q.117, B:E.239, B:R.272, B:R.272, B:R.272, B:K.294, B:R.325 Salt bridges: B:R.113, B:R.272, B:K.294, B:K.294, B:R.325, B:H.357, B:H.357 PEP.15: 11 residues within 4Å: Chain C: R.113, P.121, W.268, G.270, D.271, R.272, K.294, R.325, H.357, E.399 Ligands: CO.19 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:P.121 Hydrogen bonds: C:D.271 Water bridges: C:E.239, C:E.239, C:R.272, C:R.272, C:R.272, C:K.294, C:R.325, C:H.357, C:E.399 Salt bridges: C:R.113, C:R.272, C:K.294, C:K.294, C:R.325, C:H.357, C:H.357 PEP.22: 11 residues within 4Å: Chain D: R.113, P.121, W.268, G.270, D.271, R.272, K.294, R.325, H.357, E.399 Ligands: CO.26 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:P.121 Hydrogen bonds: D:D.271 Water bridges: D:E.239, D:E.239, D:R.272, D:R.272, D:R.272, D:K.294, D:R.325 Salt bridges: D:R.113, D:R.272, D:K.294, D:K.294, D:R.325, D:H.357, D:H.357

4 x TRP: TRYPTOPHAN(Non-covalent)

TRP.2: 11 residues within 4Å: Chain A: L.94, V.98, K.110, A.182, L.184, W.190, Q.228, E.231, T.232 Chain C: A.220, C.221 15 PLIP interactions: 14 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:L.94, A:V.98, A:L.184, A:L.184, A:L.184, A:W.190 Hydrogen bonds: A:A.182, A:Q.228, A:T.232, A:T.232, W.2 Water bridges: A:K.110, A:S.233 Salt bridges: A:K.110 pi-Cation interactions: A:K.110 TRP.9: 11 residues within 4Å: Chain B: L.94, V.98, K.110, A.182, L.184, W.190, Q.228, E.231, T.232 Chain D: A.220, C.221 15 PLIP interactions: 14 interactions with chain B, 1 Ligand-Ligand interactions Hydrophobic interactions: B:L.94, B:V.98, B:L.184, B:L.184, B:L.184, B:W.190 Hydrogen bonds: B:A.182, B:Q.228, B:T.232, B:T.232, W.9 Water bridges: B:K.110, B:S.233 Salt bridges: B:K.110 pi-Cation interactions: B:K.110 TRP.16: 11 residues within 4Å: Chain A: A.220, C.221 Chain C: L.94, V.98, K.110, A.182, L.184, W.190, Q.228, E.231, T.232 14 PLIP interactions: 13 interactions with chain C, 1 Ligand-Ligand interactions Hydrophobic interactions: C:L.94, C:V.98, C:L.184, C:L.184, C:L.184, C:W.190 Hydrogen bonds: C:A.182, C:Q.228, C:T.232, W.16 Water bridges: C:K.110, C:S.233 Salt bridges: C:K.110 pi-Cation interactions: C:K.110 TRP.23: 11 residues within 4Å: Chain B: A.220, C.221 Chain D: L.94, V.98, K.110, A.182, L.184, W.190, Q.228, E.231, T.232 14 PLIP interactions: 13 interactions with chain D, 1 Ligand-Ligand interactions Hydrophobic interactions: D:L.94, D:V.98, D:L.184, D:L.184, D:L.184, D:W.190 Hydrogen bonds: D:A.182, D:Q.228, D:T.232, W.23 Water bridges: D:K.110, D:S.233 Salt bridges: D:K.110 pi-Cation interactions: D:K.110

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: R.122, S.123, K.362, K.368, T.426 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.123, A:S.123, A:S.123, A:T.426 Water bridges: A:R.122, A:S.124, A:S.124 Salt bridges: A:R.122, A:K.362, A:K.368 PO4.4: 2 residues within 4Å: Chain A: D.28, H.31 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.28, A:D.28, A:D.28 Water bridges: A:R.34 Salt bridges: A:H.31 PO4.10: 5 residues within 4Å: Chain B: R.122, S.123, K.362, K.368, T.426 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.123, B:S.123, B:S.123, B:T.426 Water bridges: B:R.122, B:S.124, B:S.124 Salt bridges: B:R.122, B:K.362, B:K.368 PO4.11: 2 residues within 4Å: Chain B: D.28, H.31 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.28, B:D.28, B:D.28 Water bridges: B:R.34 Salt bridges: B:H.31 PO4.17: 5 residues within 4Å: Chain C: R.122, S.123, K.362, K.368, T.426 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:S.123, C:S.123, C:S.123, C:T.426 Water bridges: C:R.122, C:S.124, C:S.124 Salt bridges: C:R.122, C:K.362, C:K.368 PO4.18: 2 residues within 4Å: Chain C: D.28, H.31 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.28, C:D.28 Water bridges: C:R.34 Salt bridges: C:H.31 PO4.24: 5 residues within 4Å: Chain D: R.122, S.123, K.362, K.368, T.426 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:S.123, D:S.123, D:S.123, D:T.426 Water bridges: D:R.122, D:S.124, D:S.124 Salt bridges: D:R.122, D:K.362, D:K.368 PO4.25: 2 residues within 4Å: Chain D: D.28, H.31 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.28, D:D.28 Water bridges: D:R.34 Salt bridges: D:H.31

4 x CO: COBALT (II) ION(Non-covalent)

CO.5: 6 residues within 4Å: Chain A: C.74, H.357, R.370, E.399, D.429 Ligands: PEP.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.357, A:E.399, A:E.399, A:D.429, H2O.6 CO.12: 6 residues within 4Å: Chain B: C.74, H.357, R.370, E.399, D.429 Ligands: PEP.8 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.357, B:E.399, B:E.399, B:D.429, H2O.18 CO.19: 6 residues within 4Å: Chain C: C.74, H.357, R.370, E.399, D.429 Ligands: PEP.15 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:H.357, C:E.399, C:E.399, C:D.429, H2O.30 CO.26: 6 residues within 4Å: Chain D: C.74, H.357, R.370, E.399, D.429 Ligands: PEP.22 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:H.357, D:E.399, D:E.399, D:D.429, H2O.43

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: A.373, A.377 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: P.44, R.251 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: A.373, A.377 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: P.44, R.251 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain C: A.373, A.377 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain C: P.44, R.251 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain D: A.373, A.377 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: P.44, R.251 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sterritt, O.W. et al., A Pseudoisostructural Type II DAH7PS Enzyme from Pseudomonas aeruginosa: Alternative Evolutionary Strategies to Control Shikimate Pathway Flux. Biochemistry (2018)

Release Date

2018-02-28

Peptides

Phospho-2-dehydro-3-deoxyheptonate aldolase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Phospho-2-dehydro-3-deoxyheptonate aldolase

Related Entries With Identical Sequence