- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.2: 14 residues within 4Å:- Chain A: W.14, Q.31, G.32, Y.120, N.179, Y.210, F.333, R.390
- Chain B: Y.58, T.59, G.61, Y.272, T.273
- Ligands: PMP.1
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:T.59, B:T.273, A:G.32, A:N.179, A:Y.210
- Water bridges: B:Y.58
- Salt bridges: A:R.390
EPE.10: 13 residues within 4Å:- Chain A: Y.58, T.59, G.61, Y.272, T.273
- Chain B: W.14, Q.31, G.32, Y.120, N.179, F.333, R.390
- Ligands: PMP.9
8 PLIP interactions:7 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:G.32, B:N.179, B:Y.210, B:Y.210, A:T.59
- Water bridges: B:Y.120, B:Y.120
- Salt bridges: B:R.390
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 11 residues within 4Å:- Chain A: M.116, P.118, F.119, Y.120, Y.123, I.173, L.174, N.175, H.178, N.179, Y.185
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:M.116, A:M.116, A:Y.120, A:N.175, A:N.179, A:Y.185
GOL.5: 6 residues within 4Å:- Chain A: K.142, S.152, T.155, T.186, Q.188, E.189
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.152, A:K.183, A:T.186, A:T.186
GOL.12: 5 residues within 4Å:- Chain B: Q.191, A.194, D.195, V.198, P.227
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:Q.191
GOL.13: 5 residues within 4Å:- Chain B: I.78, E.211, W.212, H.220, K.222
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.211, B:E.211
- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 1 residues within 4Å:- Chain A: Q.82
No protein-ligand interaction detected (PLIP)CA.7: 1 residues within 4Å:- Chain A: H.200
5 PLIP interactions:5 Ligand-Water interactions- Metal complexes: H2O.1, H2O.3, H2O.3, H2O.5, H2O.8
CA.8: 2 residues within 4Å:- Chain A: N.2, E.7
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:E.7, A:E.7, H2O.5, H2O.7
CA.14: 1 residues within 4Å:- Chain B: H.200
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:H.200, H2O.11, H2O.13, H2O.14, H2O.15
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)
- Release Date
- 2017-11-29
- Peptides
- Kynurenine--oxoglutarate transaminase 3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.26 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PMP: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE(Non-covalent)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wlodawer, A. et al., Detect, correct, retract: How to manage incorrect structural models. FEBS J. (2018)
- Release Date
- 2017-11-29
- Peptides
- Kynurenine--oxoglutarate transaminase 3: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B