SMTL ID : 5vjh.1

Closed State CryoEM Reconstruction of Hsp104:ATPyS and FITC casein

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-oligomer

Ligands

12 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)(Covalent)

AGS.1: 16 residues within 4Å: Chain A: D.184, P.185, V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, L.393 Chain F: R.333 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain F Hydrogen bonds: A:D.184, A:I.187, A:I.187, A:G.215, A:G.217, A:K.218, A:T.219, A:A.220, F:R.333 Salt bridges: F:R.333, F:R.333 AGS.2: 14 residues within 4Å: Chain A: V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, A.825, R.826, N.829 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:V.581, A:V.581, A:G.617, A:G.617, A:G.619, A:K.620, A:T.621, A:E.622, A:A.825, A:N.829 AGS.3: 20 residues within 4Å: Chain A: R.307, A.330, R.333, R.334 Chain B: P.185, V.186, I.187, R.189, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, D.390, L.393 18 PLIP interactions: 6 interactions with chain A, 12 interactions with chain B Hydrogen bonds: A:R.307, A:R.333, A:R.334, B:D.184, B:I.187, B:I.187, B:G.215, B:I.216, B:G.217, B:K.218, B:K.218, B:T.219, B:T.219, B:A.220 Salt bridges: A:R.307, A:R.333, A:R.333, B:K.218 AGS.4: 17 residues within 4Å: Chain B: E.579, V.580, V.581, Q.583, L.615, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, N.829 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:V.581, B:V.581, B:G.617, B:G.619, B:T.621, B:T.621, B:T.621, B:E.622, B:N.829 Salt bridges: B:K.620 AGS.5: 19 residues within 4Å: Chain B: A.330, R.333, R.334 Chain C: D.184, P.185, V.186, I.187, R.189, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, L.393 15 PLIP interactions: 11 interactions with chain C, 4 interactions with chain B Hydrogen bonds: C:D.184, C:D.184, C:I.187, C:I.187, C:R.189, C:G.217, C:K.218, C:T.219, C:T.219, C:A.220, B:R.333, B:R.334 Salt bridges: C:K.218, B:R.333, B:R.333 AGS.6: 18 residues within 4Å: Chain B: R.765 Chain C: E.579, V.580, V.581, S.616, G.617, S.618, G.619, K.620, T.621, E.622, N.728, L.775, I.783, R.787, A.825, R.826, N.829 15 PLIP interactions: 14 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:V.581, C:V.581, C:G.617, C:G.619, C:K.620, C:K.620, C:T.621, C:T.621, C:T.621, C:E.622, C:N.728, C:N.829, B:R.765 Salt bridges: C:K.620, C:R.826 AGS.7: 18 residues within 4Å: Chain C: I.204, R.334 Chain D: D.184, P.185, V.186, I.187, R.189, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, L.393 15 PLIP interactions: 4 interactions with chain C, 11 interactions with chain D Hydrogen bonds: C:R.307, C:R.334, D:D.184, D:I.187, D:I.187, D:G.215, D:I.216, D:G.217, D:K.218, D:T.219, D:T.219, D:A.220 Salt bridges: C:R.333, C:R.333, D:K.218 AGS.8: 15 residues within 4Å: Chain D: R.333, R.334 Chain E: V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, I.351, L.355, P.389, L.393 13 PLIP interactions: 3 interactions with chain D, 10 interactions with chain E Hydrogen bonds: D:R.334, E:I.187, E:I.187, E:G.215, E:I.216, E:G.217, E:K.218, E:T.219, E:T.219, E:A.220 Salt bridges: D:R.333, D:R.333, E:K.218 AGS.9: 19 residues within 4Å: Chain C: R.765 Chain D: E.579, V.580, V.581, Q.583, S.616, G.617, S.618, G.619, K.620, T.621, E.622, N.728, L.775, I.783, R.787, A.825, R.826, N.829 22 PLIP interactions: 20 interactions with chain D, 2 interactions with chain C Hydrogen bonds: D:V.581, D:V.581, D:L.615, D:G.617, D:S.618, D:G.619, D:K.620, D:K.620, D:T.621, D:T.621, D:E.622, D:E.622, D:N.728, D:R.787, D:R.787, D:R.826, D:N.829, C:R.765, C:R.765 Salt bridges: D:K.620, D:R.826, D:R.826 AGS.10: 19 residues within 4Å: Chain D: R.765 Chain E: E.579, V.580, V.581, Q.583, L.615, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, R.826, N.829 18 PLIP interactions: 18 interactions with chain E Hydrogen bonds: E:V.581, E:V.581, E:G.617, E:S.618, E:S.618, E:G.619, E:K.620, E:K.620, E:T.621, E:T.621, E:E.622, E:E.622, E:R.787, E:R.787, E:N.829 Salt bridges: E:K.620, E:R.826, E:R.826 AGS.11: 15 residues within 4Å: Chain E: R.333 Chain F: P.185, V.186, I.187, P.214, G.215, I.216, G.217, K.218, T.219, A.220, E.223, T.317, I.351, P.389 10 PLIP interactions: 9 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:D.184, F:G.215, F:G.215, F:G.217, F:K.218, F:K.218, F:T.219, F:E.223 Salt bridges: F:K.218, E:R.333 AGS.12: 18 residues within 4Å: Chain E: E.761, R.765 Chain F: V.580, V.581, L.615, S.616, G.617, S.618, G.619, K.620, T.621, E.622, L.775, I.783, R.787, A.825, R.826, N.829 17 PLIP interactions: 16 interactions with chain F, 1 interactions with chain E Hydrogen bonds: F:V.581, F:G.617, F:S.618, F:S.618, F:S.618, F:G.619, F:K.620, F:T.621, F:T.621, F:E.622, F:E.622, F:R.787, F:R.787, F:R.787, F:N.829 Salt bridges: F:R.826, E:R.765

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gates, S.N. et al., Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104. Science (2017)

Release Date

2017-07-05

Peptides

Heat shock protein 104: ABCDEF
FITC casein: G

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
P

Heat shock protein 104

FITC casein

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