SMTL ID : 5vnx.1 (2 other biounits)

Crystal structure of an 8-amino-7-oxononanoate synthase from Burkholderia multivorans with a potential glycine-PLP-Lys242 cyclized intermediate or byproduct

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.1: 5 residues within 4Å: Chain A: R.21, M.184, I.354, R.355, T.358 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.354, A:T.358 Hydrogen bonds: A:R.21, A:R.355, A:R.355 Water bridges: A:R.355 BEN.2: 5 residues within 4Å: Chain A: E.293, A.296, R.297, H.300, A.372 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.296, A:R.297, A:H.300 Hydrogen bonds: A:R.297

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 3 residues within 4Å: Chain A: G.291, D.292, E.293 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.292, A:E.293 Water bridges: A:D.292 EDO.4: 5 residues within 4Å: Chain A: E.92, F.96, L.286, K.287, A.290 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.92, A:E.92 EDO.6: 5 residues within 4Å: Chain A: L.135, H.156, D.185, D.187, V.320 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.185 Water bridges: A:H.156, A:D.187

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 6 residues within 4Å: Chain A: A.124, G.125, K.126, D.127, A.128, T.173 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.125, A:D.127, A:A.128, A:T.173 Water bridges: A:T.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Conrady, D.G. et al., Crystal structure of a 8-amino-7-oxononanoate synthase from Burkholderia multivorans with a potential glycine-PLP-Lys242 cyclized intermediate or byproduct. to be published

Release Date

2017-05-17

Peptides

8-amino-7-oxononanoate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

8-amino-7-oxononanoate synthase

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