SMTL ID : 5vrp.3 (2 other biounits)

Crystal Structure of Human Renin in Complex with a biphenylpipderidinylcarbinol

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.22 Å

Oligo State

homo-dimer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.71, N.72, T.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72 NAG.5: 3 residues within 4Å: Chain B: N.72, T.74, M.104 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.74

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: S.288, S.289 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.288, A:S.289

4 x 9JD: methyl [(4S)-4-{(3R)-1-[(3S)-4-amino-3-hydroxybutanoyl]piperidin-3-yl}-4-(3'-ethyl-6-fluoro[1,1'-biphenyl]-2-yl)-4-hydroxybutyl]carbamate(Non-covalent)

9JD.3: 23 residues within 4Å: Chain A: T.15, Q.16, Y.17, V.33, D.35, Y.80, S.81, T.82, P.115, L.118, A.119, F.121, V.124, Y.159, D.223, T.224, G.225, A.226, S.227, M.300, A.314 Chain B: L.249 Ligands: 9JD.4 14 PLIP interactions: 13 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Q.16, A:T.82, A:P.115, A:F.121, A:F.121, A:F.121, A:V.124, B:L.249 Hydrogen bonds: A:Y.17, A:D.35, A:S.81, A:G.225, A:S.227, A:S.227 9JD.4: 12 residues within 4Å: Chain A: T.15, L.118, A.226, S.227, Y.228, F.250, D.251, F.283, T.294, H.298 Chain B: F.250 Ligands: 9JD.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.118, A:F.250 Hydrogen bonds: A:Y.228, A:Y.228, A:T.294, A:T.294 9JD.6: 21 residues within 4Å: Chain B: T.15, Q.16, Y.17, V.33, D.35, Y.80, S.81, T.82, P.115, F.116, F.121, V.124, Y.159, D.223, T.224, G.225, A.226, S.227, M.300, A.314 Ligands: 9JD.7 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:P.115, B:F.121, B:F.121, B:V.124 Hydrogen bonds: B:Y.17, B:D.35, B:S.81, B:G.225, B:S.227, B:S.227 pi-Stacking: B:Y.80 9JD.7: 13 residues within 4Å: Chain A: L.114, F.250 Chain B: T.15, S.227, Y.228, F.250, D.251, F.283, E.285, T.294, H.298, M.300 Ligands: 9JD.6 12 PLIP interactions: 8 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.228, B:F.250, B:F.250, B:D.251, B:H.298, A:L.114, A:L.114, A:L.114, A:F.250 Hydrogen bonds: B:S.227, B:Y.228, B:E.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lawhorn, B.G. et al., Discovery of renin inhibitors containing a simple aspartate binding moiety that imparts reduced P450 inhibition. Bioorg. Med. Chem. Lett. (2017)

Release Date

2017-10-18

Peptides

Renin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Renin

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